PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10010050m
Common NameCARUB_v10010050mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 261aa    MW: 28764.8 Da    PI: 4.9586
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10010050mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.3e-13194239655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L+el+P+     +k  + a++Le+AveY+k Lq
  Carubv10010050m 194 SIAERVRRTRISDRIRRLQELVPNM----DKQTNTADMLEEAVEYVKTLQ 239
                      689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.678188238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.03E-16191255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.61E-12192243No hitNo description
Gene3DG3DSA:4.10.280.105.8E-16193254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-12194244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-10194239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MQSTNVGGGS GDCGGGGGEM SRSGLSRIRS APATWIETLL EEEDEEEGLK PNLCLTELLT  60
GNNNNSSVGI TSRDSFEFRT SAEQGLYSNS HQGGGFHRQN SSPADFLSGS GPGTDGFFSN  120
FGIPANYDYL SPNVDISPTK RSRDMETQFS SQMKEEQMSG GISGMMDMNM DKLLEDSVPC  180
RVRAKRGCAT HPRSIAERVR RTRISDRIRR LQELVPNMDK QTNTADMLEE AVEYVKTLQS  240
QIQELTEQQK RCRCKPKEEQ *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10010050m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4117910.0AF411791.1 Arabidopsis thaliana At1g35460/F12A4_2 mRNA, complete cds.
GenBankAY0937940.0AY093794.1 Arabidopsis thaliana At1g35460/F12A4_2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006303282.10.0transcription factor bHLH80 isoform X1
SwissprotQ9C8P81e-150BH080_ARATH; Transcription factor bHLH80
TrEMBLR0IDA10.0R0IDA1_9BRAS; Uncharacterized protein
STRINGXP_006303282.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51042551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.11e-136bHLH family protein