PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10009949m
Common NameCARUB_v10009949mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 283aa    MW: 30964.5 Da    PI: 8.3743
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10009949mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.79.2e-2192141255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  Carubv10009949m  92 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDKAAFKLRG 141
                      59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.65E-3591151No hitNo description
SMARTSM003805.4E-3992155IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-3292150IPR001471AP2/ERF domain
PROSITE profilePS5103223.23592149IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-2392150IPR016177DNA-binding domain
PRINTSPR003672.3E-1193104IPR001471AP2/ERF domain
PfamPF008471.1E-1493141IPR001471AP2/ERF domain
PRINTSPR003672.3E-11115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MATSMDFYSS SSNTTFQQSP DPFGGELMEA LLPFFKSPSI NDSSAFAFSS SLPAPPVSSS  60
SYGSDLHLNH RLSPKPVSMK QTGSSAPKPM KLYRGVRQRH WGKWVAEIRL PRNRTRLWLG  120
TFDTAEEAAL AYDKAAFKLR GDFARLNFPN LRHNGSNIGE YQPLQSSVDA KLEAICQNLA  180
ETTQKQVKPT KKSASRKRSP TAAVVKQTEV DSGVKSEDYS SAGSSPPLTE SYGSGGSSSP  240
LSDLTFGDAE EEIQPPWNYA LEKYPSYEID WDSILQSSSL VK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-2191149160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10009949m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006303258.10.0ethylene-responsive transcription factor RAP2-13
SwissprotQ9LM151e-136RA213_ARATH; Ethylene-responsive transcription factor RAP2-13
TrEMBLR0GK780.0R0GK78_9BRAS; Uncharacterized protein
STRINGXP_006303258.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27162670
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.11e-116ERF family protein
Publications ? help Back to Top
  1. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  2. Rudnik R,Bulcha JT,Reifschneider E,Ellersiek U,Baier M
    Specificity versus redundancy in the RAP2.4 transcription factor family of Arabidopsis thaliana: transcriptional regulation of genes for chloroplast peroxidases.
    BMC Plant Biol., 2017. 17(1): p. 144
    [PMID:28835225]