PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10009923m | ||||||||
Common Name | CARUB_v10009364mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | SBP | ||||||||
Protein Properties | Length: 288aa MW: 32660.9 Da PI: 10.195 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 128.6 | 2.3e-40 | 66 | 142 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cq++gC+ dls+ak+yhr+h+vCe+hsk+p+v+vsgle+rfCqqCsrfh++sefDe+krsCr+rL++hn+rrrk+q Carubv10009923m 66 RCQIDGCDLDLSTAKDYHRKHRVCEKHSKCPKVTVSGLERRFCQQCSRFHAVSEFDEKKRSCRKRLSHHNARRRKPQ 142 6**************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.2E-33 | 59 | 128 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.308 | 64 | 141 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.2E-37 | 65 | 143 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 5.3E-31 | 67 | 140 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010358 | Biological Process | leaf shaping | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MQACITKFPW RFLQHHRFFP GKRTYSEELW GRNNNDISAV SMKLLTPSVV ARKKSKSCGQ 60 SMQVPRCQID GCDLDLSTAK DYHRKHRVCE KHSKCPKVTV SGLERRFCQQ CSRFHAVSEF 120 DEKKRSCRKR LSHHNARRRK PQGVFPLNPE RVYDRRQHTS MLWNGLSLNT RSEETYAWGT 180 TYETKPTQME SGFTLSFQRG NGPEEQLFAS SSRSFSVFQS SGGFSAGKSN VQLPGKGLGE 240 CSGGLHESQD FYSALSLLST SSEPRGTKHN PVVEPQPIFG TFPTHFI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 8e-27 | 67 | 140 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 122 | 139 | KKRSCRKRLSHHNARRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10009923m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ011637 | 0.0 | AJ011637.1 Arabidopsis thaliana (ecotype Columbia) mRNA for squamosa promoter binding protein-like 10. | |||
GenBank | AY074853 | 0.0 | AY074853.1 Arabidopsis thaliana At1g27370/F17L21_16 mRNA, complete cds. | |||
GenBank | AY142028 | 0.0 | AY142028.1 Arabidopsis thaliana At1g27370/F17L21_16 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006304999.1 | 0.0 | squamosa promoter-binding-like protein 10 | ||||
Refseq | XP_023646039.1 | 0.0 | squamosa promoter-binding-like protein 10 | ||||
Refseq | XP_023646040.1 | 0.0 | squamosa promoter-binding-like protein 10 | ||||
Swissprot | Q8S9L0 | 1e-177 | SPL10_ARATH; Squamosa promoter-binding-like protein 10 | ||||
TrEMBL | R0GQ30 | 0.0 | R0GQ30_9BRAS; Uncharacterized protein | ||||
STRING | XP_006304999.1 | 0.0 | (Capsella rubella) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27370.4 | 1e-165 | squamosa promoter binding protein-like 10 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10009923m |
Entrez Gene | 17899618 |
Publications ? help Back to Top | |||
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