PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10009872m | ||||||||
Common Name | CARUB_v10009871mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | GATA | ||||||||
Protein Properties | Length: 301aa MW: 33355.8 Da PI: 8.0268 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 63.6 | 2.3e-20 | 219 | 253 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C ttkTp+WR+gp+g+ktLCnaCG++yr+ +l Carubv10009872m 219 CTHCETTKTPQWREGPSGPKTLCNACGVRYRSGRL 253 *******************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.0E-20 | 213 | 263 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.281 | 217 | 249 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.28E-15 | 217 | 276 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.3E-15 | 217 | 250 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.71E-17 | 218 | 267 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 219 | 244 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 4.3E-18 | 219 | 253 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MNWLPEEDFK GILSDDFFDD LVDQLDCPLE DIDTTNGEGD WVAKFQDLEP PPMDMFPTLP 60 CHLTSCANAK PAPLGFHKTV PPLKHSSSSE ALSGINSTLL QSSPPPDIKV SKMFQSLSPV 120 SVFVSSCDSL SPQNSRSQGL AFPVKGMRSK RKRPTTLRFS YLLPFEPRMP EKLTPGESGS 180 ESYHSSEQHA KKKRKIQLTT HTVSSSFEAS NSDGIVRKCT HCETTKTPQW REGPSGPKTL 240 CNACGVRYRS GRLVPEYRPA SSPTFIPSLH SNSHRKIIEM RRKDDNQFDT SMMHVVISGA 300 * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00130 | DAP | Transfer from AT1G08010 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10009872m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006304051.1 | 0.0 | GATA transcription factor 11 | ||||
Swissprot | Q6DBP8 | 1e-163 | GAT11_ARATH; GATA transcription factor 11 | ||||
TrEMBL | R0IF88 | 0.0 | R0IF88_9BRAS; Uncharacterized protein | ||||
STRING | XP_006304051.1 | 0.0 | (Capsella rubella) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08010.2 | 1e-149 | GATA transcription factor 11 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10009872m |
Entrez Gene | 17899960 |