PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10009870m
Common NameCARUB_v10009451mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 302aa    MW: 34910 Da    PI: 4.8585
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10009870mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM120.31.8e-3751363128
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek....ewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      +Gf+F+P+deelv +yL++k+eg++  ++++i+ev+i++++PwdL+++ k ++k     wyfFs+r++    g r+nr t sg+Wk tg++ +v
  Carubv10009870m   5 VGFEFRPNDEELVGHYLRNKIEGDTSLVDTAIPEVNICSYDPWDLRRQSKIRSKypvsVWYFFSRREN----GIRQNRRTPSGFWKLTGESVDV 94 
                      7************************999889**************853333333335599****9865....88******************** PP

              NAM  93 lsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++       + ++g k++Lvf kgr ++ +k+dWvmhe++ 
  Carubv10009870m  95 NDQwgfwtgAQGKIGHKRVLVFLKGRGSQQTKSDWVMHEFHY 136
                      **99999887778***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100541.583156IPR003441NAC domain
SuperFamilySSF1019412.62E-394156IPR003441NAC domain
PfamPF023657.7E-235135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MEGMVGFEFR PNDEELVGHY LRNKIEGDTS LVDTAIPEVN ICSYDPWDLR RQSKIRSKYP  60
VSVWYFFSRR ENGIRQNRRT PSGFWKLTGE SVDVNDQWGF WTGAQGKIGH KRVLVFLKGR  120
GSQQTKSDWV MHEFHYDYDL LPEHERTYVI CRLEYKGRDT KFLFDCPTDP TPTFVPNPTN  180
SEGSVVDRSF EEYLGSFYNI SEFDSANQGH QLGNFNMQQQ VPYLEDSCVD DPQRIWDYPI  240
SEIMSIMQVN PSNHCPKTPL TGVLADDSCD SDTDSMVSPL HIRLSQNMNG FCFLHVDFCF  300
L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-19613518139Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10009870m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305085.10.0NAC domain-containing protein 1
SwissprotQ0WV961e-101NAC1_ARATH; NAC domain-containing protein 1
TrEMBLR0GPZ90.0R0GPZ9_9BRAS; Uncharacterized protein
STRINGXP_006305085.10.0(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01010.11e-103NAC domain containing protein 1
Publications ? help Back to Top
  1. Davuluri RV, et al.
    AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors.
    BMC Bioinformatics, 2003. 4: p. 25
    [PMID:12820902]
  2. Palaniswamy SK, et al.
    AGRIS and AtRegNet. a platform to link cis-regulatory elements and transcription factors into regulatory networks.
    Plant Physiol., 2006. 140(3): p. 818-29
    [PMID:16524982]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]