PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10009866m
Common NameCARUB_v10009866mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GATA
Protein Properties Length: 303aa    MW: 32876.6 Da    PI: 7.1892
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10009866mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.92.2e-16223258134
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                      C++Cg ++  Tp++Rrgp+g++tLCnaCGl+++ kg
  Carubv10009866m 223 CRHCGISEksTPMMRRGPEGPRTLCNACGLMWANKG 258
                      *****99999***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.51377112IPR010399Tify domain
SMARTSM009797.6E-1177112IPR010399Tify domain
PfamPF062003.0E-1179111IPR010399Tify domain
PfamPF062032.1E-15147189IPR010402CCT domain
PROSITE profilePS5101712.987147189IPR010402CCT domain
SMARTSM004012.6E-12217270IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.156217265IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.66E-13218282No hitNo description
Gene3DG3DSA:3.30.50.101.3E-15221264IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.47E-15222272No hitNo description
PfamPF003202.8E-14223258IPR000679Zinc finger, GATA-type
PROSITE patternPS003440223250IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MDDLHGSNAR MHIGEAQDSM HVQYEHHALH HIHNGSGMVD DHADGGNAGG MSEGVETDIP  60
SHPGNITDNR GEVVDRGSEQ GDQLTLSFQG QVYVFDSVLP EKVQAVLLLL GGRELPQATP  120
TGLGSSHHNN RALGLPGTPQ RFSIPQRLAS LVRFREKRKG RNFDKKIRYT VRKEVALRMQ  180
RNKGQFTSAK SVNDEAASAG SSWGSNQTWA IEGSEAQNQE ISCRHCGISE KSTPMMRRGP  240
EGPRTLCNAC GLMWANKGAL RDLSKGAPPQ TPQNVPLSKN EDANLEADQM MISVANNISN  300
SQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10009866m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1190610.0AB119061.1 Arabidopsis thaliana ZML2 mRNA for GATA-type zinc finger protein, complete cds.
GenBankAY1503950.0AY150395.1 Arabidopsis thaliana putative flowering protein CONSTANS (At1g51600) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305455.10.0GATA transcription factor 28 isoform X1
RefseqXP_023644658.10.0GATA transcription factor 28 isoform X1
SwissprotQ8H1G00.0GAT28_ARATH; GATA transcription factor 28
TrEMBLR0IMP10.0R0IMP1_9BRAS; Uncharacterized protein
STRINGXP_006305455.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36842659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.20.0ZIM-LIKE 2