PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10009735m
Common NameCARUB_v10009735mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Dof
Protein Properties Length: 327aa    MW: 35398.2 Da    PI: 9.4504
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10009735mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.53e-383999262
           zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                     ++ +lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGg+ rknk+++
  Carubv10009735m 39 PQPQLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGSYRKNKRMK 99
                     67899*****************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027013.3E-334297IPR003851Zinc finger, Dof-type
ProDomPD0074785.0E-274397IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.9014397IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104581IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MPIISSPNTN PLASMQSKNM IVASSHQQQQ QQQQQPQQPQ PQLKCPRCDS SNTKFCYYNN  60
YSLSQPRHFC KACKRYWTRG GTLRNVPVGG SYRKNKRMKR PSTTTATTAS TVSTTTSSSP  120
NNSHQISHFS SMNHHHPLFY GLSDHVSSCN NLPMIPSRFS DSSKTSSSSG LEGEFLSSGF  180
SSLSSLGLGL PHHMSHDHNI NGSFVNNSTT NKPFLLSGLF GSSMSSSSST LLQQQHKPIN  240
NGSDMLGQSH LQTLASLQDL HVGGNCGDMN KEGKLDQISG NINGFMSSSS LDPSNYSSMW  300
NNASVVNGAW LDPTNNNVGS SLTSLI*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10009735m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2992720.0AY299272.1 Arabidopsis thaliana clone D2 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305356.20.0dof zinc finger protein DOF1.4
SwissprotQ9FZA41e-154DOF14_ARATH; Dof zinc finger protein DOF1.4
TrEMBLR0I7E40.0R0I7E4_9BRAS; Uncharacterized protein
STRINGXP_006305356.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47092650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28310.21e-131Dof family protein