PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10009677m | ||||||||
Common Name | CARUB_v10009677mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | G2-like | ||||||||
Protein Properties | Length: 336aa MW: 37581.4 Da PI: 6.0949 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.9 | 4e-32 | 193 | 248 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++WtpeLH+rFv+a++qLGG+ +AtPk+i+e+m+ +gLt+++vkSHLQkYRl+ Carubv10009677m 193 KQRRCWTPELHRRFVDALQQLGGPGVATPKQIREHMQEEGLTNDEVKSHLQKYRLH 248 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.451 | 190 | 250 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.82E-18 | 191 | 251 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.6E-28 | 192 | 251 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.7E-26 | 193 | 248 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.1E-9 | 195 | 246 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MGSLGDELSL GSICGSQRGV SKIIMNVEKL EEEKRKIESS QLELPLSLQI LNDAILYLKE 60 ENKRCSEMDT QPLLKDFISL DKPIREEIDD MQLLKRDELT REKKFQQWRA NDDHISNTKI 120 KNKLAIQRNG EKSSMLLIPK VETGLGLGLT TSSMRRKGVV ASCGFSSSDS MSQPQPLPPP 180 QQPAFLQQQA LRKQRRCWTP ELHRRFVDAL QQLGGPGVAT PKQIREHMQE EGLTNDEVKS 240 HLQKYRLHIR KPNSNAEKQS AVVLGFNLWN SSSQEEEETG EGGGESLKII NSQSDSPQGP 300 LQLPSTTTTT GGDSSMEDVE DAKSESYQVE RLRSP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00193 | DAP | Transfer from AT1G49560 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10009677m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023645453.1 | 0.0 | transcription factor HHO6 isoform X1 | ||||
Swissprot | Q9FX84 | 1e-175 | HHO6_ARATH; Transcription factor HHO6 | ||||
TrEMBL | R0IIC6 | 0.0 | R0IIC6_9BRAS; Uncharacterized protein | ||||
STRING | XP_006305302.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13927 | 18 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49560.1 | 1e-142 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10009677m |
Entrez Gene | 17898195 |
Publications ? help Back to Top | |||
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