PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10009673m | ||||||||
Common Name | CARUB_v10009673mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | bZIP | ||||||||
Protein Properties | Length: 337aa MW: 36993.2 Da PI: 5.2313 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.3 | 4.5e-10 | 149 | 204 | 5 | 60 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l ++ l Carubv10009673m 149 KRAKRILANRQSAARSKERKARYIQELERKVQSLQTEATTLSAQLTLYQRDTNGLA 204 9*****************************************99988877666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.2E-15 | 145 | 209 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.829 | 147 | 210 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.6E-8 | 149 | 203 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.4E-7 | 149 | 194 | No hit | No description |
SuperFamily | SSF57959 | 1.62E-10 | 149 | 200 | No hit | No description |
CDD | cd14703 | 7.97E-23 | 150 | 199 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MENSADPPPP PPKLSDPIHP HPIPNADPVP ASSFHRRSRS DDMSMFMFMD PLSSGAPPSS 60 DDLPSDDDLF SSFIDVDSLT SNPNPFPNPS LSSNSVSGAI NPPPPSSRPR HRHSNSVDAG 120 CAMYAGEIMD AKKAMPPEKL SELWNIDPKR AKRILANRQS AARSKERKAR YIQELERKVQ 180 SLQTEATTLS AQLTLYQRDT NGLANENTEL KLRLQAMEQQ AQLRNALNEA LRKEVERMKM 240 ETGEISGNSD SFDMGMQQIQ YSSSTFMAIP PYHGSMNGQD MQMHTSFNPM EMSNSQSVSE 300 FLQNGRLQGL EISSNSSSLV KSEGPSLSAS ESSSAY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00129 | DAP | Transfer from AT1G06850 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10009673m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ419852 | 0.0 | AJ419852.1 Arabidopsis thaliana mRNA for AtbZIP transcription factor. | |||
GenBank | AY062474 | 0.0 | AY062474.1 Arabidopsis thaliana Similar to bZIP transcription factors (At1g06850; F4H5.7) mRNA, complete cds. | |||
GenBank | BT000102 | 0.0 | BT000102.1 Arabidopsis thaliana Similar to bZIP transcription factors (At1g06850) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006305298.1 | 0.0 | transcription factor RF2b | ||||
Swissprot | Q6S4P4 | 4e-81 | RF2B_ORYSJ; Transcription factor RF2b | ||||
TrEMBL | R0IIC0 | 0.0 | R0IIC0_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.1671s0308.1.p | 0.0 | (Capsella grandiflora) | ||||
STRING | XP_006305297.1 | 0.0 | (Capsella rubella) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06850.1 | 1e-141 | basic leucine-zipper 52 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10009673m |
Entrez Gene | 17898435 |
Publications ? help Back to Top | |||
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