PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10009538m | ||||||||
Common Name | CARUB_v10009538mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | ERF | ||||||||
Protein Properties | Length: 361aa MW: 39654.8 Da PI: 4.8178 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.7 | 1.9e-20 | 127 | 176 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp+e +r++lg+f taeeAa+a++aa+++++g Carubv10009538m 127 QYRGIRQRP-WGKWAAEIRDPRE---GARIWLGTFKTAEEAARAYDAAARRIRG 176 69*******.**********965...3*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.15E-17 | 127 | 185 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.0E-32 | 127 | 186 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.395 | 127 | 184 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.29E-22 | 127 | 185 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.4E-38 | 127 | 190 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 128 | 139 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.0E-13 | 128 | 176 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 150 | 166 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070483 | Biological Process | detection of hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MCGGAIISDF IPPPRSRRVT SEFIWPDLKK NAKGSKKSSK KRSSFFDLDD EFEADFQGFK 60 DDSFVDCDDD FDVGDVFADV KPFVFGATPK PAVSAAATAA EGSTFGKKVA DVVGEAEKSA 120 KRKRKNQYRG IRQRPWGKWA AEIRDPREGA RIWLGTFKTA EEAARAYDAA ARRIRGSKAK 180 VNFPEENPTV SQKRLAKASL QKPVAKPNPN PSPALVQNPN NSFDDMSFLE EKHQVNNNNQ 240 SGLANLIDAG GNGYQYFSSD QGSNSFDCSE FGWSDQAPIT PDISSALINN NNNSPALFFE 300 EANPAKKLKS MDFETPYNNT EWDASLDFLS EDAVATEDNG ANPMDLWSID EIHSMIGGVF 360 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-22 | 127 | 184 | 5 | 63 | ATERF1 |
3gcc_A | 8e-22 | 127 | 184 | 5 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the activation of hypoxic gene expression and in ethylene response. Partially redundant with RAP2-2. Acts as a downstream regulator in the ethylene signaling pathway. {ECO:0000269|PubMed:22020282, ECO:0000269|PubMed:22530619}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00204 | DAP | Transfer from AT1G53910 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10009538m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by hypoxia but not by ethylene. {ECO:0000269|PubMed:22020282}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY088204 | 0.0 | AY088204.1 Arabidopsis thaliana clone 42960 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006305171.1 | 0.0 | ethylene-responsive transcription factor RAP2-12 | ||||
Refseq | XP_023632691.1 | 0.0 | ethylene-responsive transcription factor RAP2-12 | ||||
Refseq | XP_023632692.1 | 0.0 | ethylene-responsive transcription factor RAP2-12 | ||||
Swissprot | Q9SSA8 | 0.0 | RA212_ARATH; Ethylene-responsive transcription factor RAP2-12 | ||||
TrEMBL | R0I6Y9 | 0.0 | R0I6Y9_9BRAS; Uncharacterized protein | ||||
STRING | XP_006305171.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.2 | 1e-163 | related to AP2 12 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10009538m |
Entrez Gene | 17897191 |