PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10009494m
Common NameCARUB_v10009494mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Dof
Protein Properties Length: 371aa    MW: 41757.6 Da    PI: 6.6988
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10009494mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof118.52.6e-37105164261
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                      ++k+l+cprC+s+ntkfCy+nny+++qPr+fC++C+ryWt+GG++r vPvG+grrknk +
  Carubv10009494m 105 PDKILPCPRCNSANTKFCYFNNYNVNQPRHFCRNCQRYWTAGGSMRTVPVGSGRRKNKGW 164
                      7899*****************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-30101162IPR003851Zinc finger, Dof-type
PfamPF027011.4E-30107162IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.351109163IPR003851Zinc finger, Dof-type
PROSITE patternPS013610111147IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MSSTIGMSEV RDTPVKLFGW TITSVSHDPL SSSSPVLPDS SSSSSSSPSL QPHMMNDQSA  60
TEDTSLKISS DRNNESKETS ENSEDQHSEI TTTTSEEKTT DLKKPDKILP CPRCNSANTK  120
FCYFNNYNVN QPRHFCRNCQ RYWTAGGSMR TVPVGSGRRK NKGWVSSDHY LHITSEDTDH  180
YNSSSAKILN FESSDSSVTE NAKHHQSRDA NTNPDFVSQE QNNFQGFLPP QETSPVSHPW  240
PYQYPPNSSF YHMPVYWGCA VPVWSTVEAS TCLGKRKRDE ASHETATESK DAFVRARLVS  300
ESQSINNEAT TENNMWYPVS MKHEKTKQFN FFSDGSERKS NNNRFVPQTY LNLQANPAAM  360
ARSMNFRESM *
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10009494m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305125.10.0dof zinc finger protein DOF1.3
SwissprotQ9LQX40.0DOF13_ARATH; Dof zinc finger protein DOF1.3
TrEMBLR0ILX50.0R0ILX5_9BRAS; Uncharacterized protein
STRINGXP_006305125.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM140821624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26790.11e-176Dof family protein