PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10009492m
Common NameCARUB_v10009492mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family G2-like
Protein Properties Length: 371aa    MW: 41448 Da    PI: 8.4822
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10009492mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.62.4e-32231286156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k+r++W+peLH+rF++a++qLGGs++AtPk+i++lmkv+gLt+++vkSHLQkYRl+
  Carubv10009492m 231 KQRRCWSPELHRRFLHALQQLGGSHVATPKQIRDLMKVDGLTNDEVKSHLQKYRLH 286
                      79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.288228288IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-28229289IPR009057Homeodomain-like
SuperFamilySSF466894.61E-18229289IPR009057Homeodomain-like
TIGRFAMsTIGR015577.1E-27231286IPR006447Myb domain, plants
PfamPF002492.7E-7233284IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MLKSGAMDYT NNMKRCHDYV EALEQEQKKI QVFQRELPLC LELVTQAIES CRKELSESSS  60
MSEHARSQSE CSERTTSECG DAAPVFEEFI PIKWTSSSSD ANDKDHVADR DESIKTNSDN  120
NAGGDKKKSD WLRSVQLWNQ SSPDPQPKDD QVIINKKAAV IEVKRNNAGA FQPFQKDKPN  180
KKANYNNDDS PQPLIKAITP TPTTTSSSTA ETTVGGKNEF EQLKQSPSNR KQRRCWSPEL  240
HRRFLHALQQ LGGSHVATPK QIRDLMKVDG LTNDEVKSHL QKYRLHTRRP ATPVSTNVGE  300
NTQQQQQQRQ FMVVEGIWVP SSHDATNGRV YAPVATQPQQ PSPSGERSST RCKSPATSSS  360
THTPHLLPLS *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00160DAPTransfer from AT1G25550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10009492m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305123.10.0transcription factor HHO3
SwissprotQ9FPE81e-171HHO3_ARATH; Transcription factor HHO3
TrEMBLR0GQJ30.0R0GQJ3_9BRAS; Uncharacterized protein
STRINGXP_006305123.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34912863
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.11e-151G2-like family protein
Publications ? help Back to Top
  1. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]