PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10009424m
Common NameCARUB_v10009424mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 385aa    MW: 43489.4 Da    PI: 8.8585
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10009424mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.4e-066183123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C++C++ F r  nL+ H r+H
  Carubv10009424m 61 YVCEICNQGFQRDQNLQMHRRRH 83
                     9*********************9 PP
2zf-C2H2157.1e-05140162123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ C+k +  +s++k H++t+
  Carubv10009424m 140 WVCERCSKGYAVQSDFKAHLKTC 162
                      58*******************98 PP
3zf-C2H211.20.0012170188523
                      TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                      dCg++Fsr +++  H+ t+
  Carubv10009424m 170 DCGRVFSRVESFIEHQDTC 188
                      9***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.05E-55884No hitNo description
Gene3DG3DSA:3.30.160.601.5E-56083IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF128740.0186179No hitNo description
SMARTSM003550.00526183IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.976183IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
SMARTSM00355160104134IPR015880Zinc finger, C2H2-like
SMARTSM0035581140167IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MIDYEQNNDH RNLPTSSSND LLLGINGAAA AKRKRRPAGT PDPDAEVVSL SPRTLLESDR  60
YVCEICNQGF QRDQNLQMHR RRHKVPWKLL KREKKDEEVR KRVYVCPEPT CLHHDPCHAL  120
GDLVGIKKHF RRKHSVHKQW VCERCSKGYA VQSDFKAHLK TCGSRGHSCD CGRVFSRVES  180
FIEHQDTCTI RHPSTTNHRP LQQHTPGTAA PTRTISTTSF GPLLHGLPLL RPPPPSYQHS  240
QALPYPFNAS SAPFESLELQ LSIGMARTSA QAKSTEKGET SLNKERPNEE ARKAEKMRQE  300
AKMQIEMAET DFEKAKRIRK EAKAELEKAQ TVREEAIKRI SATMMEITCH SCKHLFQLPV  360
MADESTSSLV MSYVSSATTE GECE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-17138188555Zinc finger protein JACKDAW
5b3h_F6e-17138188555Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor regulating lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD14 in directing leaf and floral organ morphogenesis (PubMed:24039602). Acts cooperatively with IDD15 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:24039602}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10009424m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934760.0AB493476.1 Arabidopsis thaliana At1g25250 mRNA for hypothetical protein, partial cds, clone: RAAt1g25250.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305059.10.0protein indeterminate-domain 16
SwissprotQ9FRH40.0IDD16_ARATH; Protein indeterminate-domain 16
TrEMBLR0GPX00.0R0GPX0_9BRAS; Uncharacterized protein
STRINGXP_006305059.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69328131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25250.10.0indeterminate(ID)-domain 16
Publications ? help Back to Top
  1. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]