PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10009390m
Common NameCARUB_v10009390mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 392aa    MW: 44261.7 Da    PI: 6.2813
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10009390mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM127.11.4e-39161433128
              NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                      +GfrF+Ptdee v++yL++k  + +  ++++vi+++ i +++Pw+Lp + ++k ++k w fF ++++ky +g+r+ r+tksg+Wk tgk k+++
  Carubv10009390m  16 VGFRFRPTDEEFVDDYLRPKNLKLDtSHVDRVISTLTISSFDPWELPsQsRIKLKDKAWCFFNRKENKYDKGERQIRKTKSGFWKITGKPKAIM 109
                      7******************9877773667778**************9525888899************************************** PP

              NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + ++ ++g k++ +fy  ++  g+k+dWvmhey+l
  Carubv10009390m 110 R-NRVKIGEKRVVMFYLRKELGGSKSDWVMHEYHL 143
                      *.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.11E-468161IPR003441NAC domain
PROSITE profilePS5100542.98414161IPR003441NAC domain
PfamPF023652.0E-2016143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
TTMAEALYCQ ELENTVGFRF RPTDEEFVDD YLRPKNLKLD TSHVDRVIST LTISSFDPWE  60
LPSQSRIKLK DKAWCFFNRK ENKYDKGERQ IRKTKSGFWK ITGKPKAIMR NRVKIGEKRV  120
VMFYLRKELG GSKSDWVMHE YHLFSPVQMM MTYTICKVMF KGDEKDISSS PAGSGIEQSH  180
SSIPPHLVNS SGGSEGSSTF RSQELQNSSQ SGLQEEAQLD DAATIPGGDE EEWKTWLNDN  240
NDVEERNIMS LQENYSDYIP PKSLTGVFTD NSSDDSDPDL LSATTNSIQT SSTCDSFGSS  300
KHRIDQNKVL QEPPNSTVKL VSLAQEVSQA LRTSIDTTEM QKMDPCDVGR GTEIGEKGQE  360
IMIKNKRAGS FIRMIQKFVK KFSQCSPISR T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-251114614145NO APICAL MERISTEM PROTEIN
1ut4_B9e-251114614145NO APICAL MERISTEM PROTEIN
1ut7_A9e-251114614145NO APICAL MERISTEM PROTEIN
1ut7_B9e-251114614145NO APICAL MERISTEM PROTEIN
3swm_A1e-241114617148NAC domain-containing protein 19
3swm_B1e-241114617148NAC domain-containing protein 19
3swm_C1e-241114617148NAC domain-containing protein 19
3swm_D1e-241114617148NAC domain-containing protein 19
3swp_A1e-241114617148NAC domain-containing protein 19
3swp_B1e-241114617148NAC domain-containing protein 19
3swp_C1e-241114617148NAC domain-containing protein 19
3swp_D1e-241114617148NAC domain-containing protein 19
4dul_A9e-251114614145NAC domain-containing protein 19
4dul_B9e-251114614145NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10009390m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305025.20.0NAC domain-containing protein 3
SwissprotQ5PP281e-137NAC3_ARATH; NAC domain-containing protein 3
TrEMBLR0ILL20.0R0ILL2_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006305025.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23151676
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02220.11e-138NAC domain containing protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chou ML, et al.
    The Direct Involvement of Dark-Induced Tic55 Protein in Chlorophyll Catabolism and Its Indirect Role in the MYB108-NAC Signaling Pathway during Leaf Senescence in Arabidopsis thaliana.
    Int J Mol Sci, 2018.
    [PMID:29937503]