PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10009348m
Common NameCARUB_v10009348mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family TCP
Protein Properties Length: 400aa    MW: 43699.1 Da    PI: 6.8246
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10009348mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP116.92.6e-36511712108
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......................ssssasec 73 
                      +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LGfd++sk+++WL+++ak ai++l+++                      +       
  Carubv10009348m  51 TGRKDRHSKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGFDRPSKAVDWLIKKAKSAIDDLAELppwdpadalrqhaaaanakprkT------- 137
                      79**************************************************************64333333333332222222220....... PP

              TCP  74 eaesssssasnsssg.............kaaksaakskksqksaasal 108
                                    +             +++++++++  ++++++s+l
  Carubv10009348m 138 --------------KtlippqpplppphHEETEHHHQIGEEDNESSFL 171
                      ..............1344444444444333333333333333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.1E-3251157IPR005333Transcription factor, TCP
PROSITE profilePS5136934.27253111IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MAANHHLVDS PSPPPLLEMR HNQSAFNTAA ENGGGCGEIV EVQGGHIVRS TGRKDRHSKV  60
CTAKGPRDRR VRLSAPTAIQ FYDVQDRLGF DRPSKAVDWL IKKAKSAIDD LAELPPWDPA  120
DALRQHAAAA NAKPRKTKTL IPPQPPLPPP HHEETEHHHQ IGEEDNESSF LPASMDSDSI  180
ADTIKSFFPV ASTQQSYHQQ PPSRATTQNQ DLLRLSLQSF QNGPPFADQT EPVLFSGQSN  240
PLGFDSSTAS WDQNHQLPEF GKIQRLVTWN NGGAADTAGG GGGFVFASPS SFQPVYSHQS  300
QLLSQRGPLQ SINTPMIRAW FDPHHHHHHP QSMTTDDLHH HHHPYHVPTG IHQSAIPGIA  360
FASSGEFSGG FRIPARFQGE QEEQGGDNKP SSASSDSRH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-2058111154Putative transcription factor PCF6
5zkt_B5e-2058111154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00203DAPTransfer from AT1G53230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10009348m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0080070.0AC008007.7 Genomic sequence for Arabidopsis thaliana BAC F12M16 from chromosome I, complete sequence.
GenBankAY0996780.0AY099678.1 Arabidopsis thaliana putative flower development protein cycloidea (At1g53230) mRNA, complete cds.
GenBankBT0002660.0BT000266.1 Arabidopsis thaliana putative flower development protein cycloidea (At1g53230) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006304984.10.0transcription factor TCP3
SwissprotQ9MAH80.0TCP3_ARATH; Transcription factor TCP3
TrEMBLR0GPM50.0R0GPM5_9BRAS; Uncharacterized protein
STRINGXP_006304984.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24082771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.10.0TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3
Publications ? help Back to Top
  1. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  2. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  3. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]