PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10009224m | ||||||||
Common Name | CARUB_v10009224mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | C2H2 | ||||||||
Protein Properties | Length: 426aa MW: 46861.3 Da PI: 9.8668 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.6 | 2.3e-05 | 183 | 205 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 Cp Cg++F+ ++L+ H+ + H Carubv10009224m 183 ACPQCGEVFPKLESLELHQAVrH 205 6******************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 182 | 205 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.683 | 182 | 210 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 4.6E-21 | 207 | 421 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 1.5E-13 | 210 | 422 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 426 aa Download sequence Send to blast |
MAPLPFIPET THKQRRLSSE QKKKNTKKKT SQPLPQTQTQ KLKQKTVPST TSSSSSSSSW 60 SQIKNLLSCK QVEGPRVHEP SKITSSSCGS SLCKFSDVIY GNARVIHRSD HSPESSNLGQ 120 DARLLTRKPV NRESSLSVRS NGCGAYSSYS TSKAMHFRKL SGCYECHMIV DPSRYPIAPR 180 VCACPQCGEV FPKLESLELH QAVRHAVSEL GPEDSGRNIV DIIFKSSWLR KDSPIYKIER 240 ILKVHNTQRT IQRFEDCRDV VKSHAHASTR KEPRSAADGN ELLRFHCTTV SCSLGSRGST 300 SLCSAVPGCR VCTIIRHGFH AKTVRLGNGE GKEEIKGVRT TASSGRAHDV LRCFDQRRAM 360 LVCRVIAGRV RRVQSDVSPE DESGSGSYDS VAGPAGVYAS LDDLVVYNPK AILPCFVVIY 420 KVSEP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 14 | 28 | RRLSSEQKKKNTKKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10009224m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK228879 | 0.0 | AK228879.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-20-B08. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006307600.1 | 0.0 | uncharacterized protein LOC17900421 | ||||
TrEMBL | R0IT11 | 0.0 | R0IT11_9BRAS; Uncharacterized protein | ||||
STRING | XP_006307600.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1916 | 28 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75710.1 | 1e-154 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10009224m |
Entrez Gene | 17900421 |