PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10009189m
Common NameCARUB_v10009189mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 434aa    MW: 48615.6 Da    PI: 6.1014
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10009189mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.51.5e-10233274854
                      HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       Er RR + +++f  L++l+P++     +K + a+i+ +A++YIk+L
  Carubv10009189m 233 TERERRVHFKDRFGDLKSLIPNP-----TKHDRASIVGEAIDYIKEL 274
                      6**********************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.68E-10223276No hitNo description
SuperFamilySSF474592.07E-12224289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.278225274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-7231280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-8233274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-10233294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
RNHPPTILEP LWTCFMEGGG GGGMFEEIGC FDPNAPAEMT AESSFSPAEP PPATTVLGSN  60
SNCSLEDLSE FHLSPQSSSL AASASAYVHQ VHINATTPHC DHHQFQTLQD PSSYAQHSNH  120
WDNGYQDFVN LGPNHTTPDL LSLLQLPRSS LPPFANPSLQ DIIMTSSSVS AYDPLFHLNH  180
PLQPPNGTLL GVDPYQTETN QGVNLMYDEE NNNLDDGLSR KGRGSRKRKV FPTERERRVH  240
FKDRFGDLKS LIPNPTKHDR ASIVGEAIDY IKELLRTIDE FKLLVEKKRI KQRNREGDDV  300
VDENFKAQSE VVEQCLINKK NNALRCSWLK RKSKFTEVDV RIIDDEVTIK IVQKKKINCL  360
LFVSKVIDQL QLDLHHVAGA QIGEHHSFLF NTKICEGSSV YASAIADRVM EVLEKQYMEA  420
LSMSNGYHCY SSD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10009189m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4886190.0AF488619.1 Arabidopsis thaliana clone bHLH089 putative bHLH transcription factor mRNA, complete cds.
GenBankBT0042620.0BT004262.1 Arabidopsis thaliana clone RAFL15-18-B21 (R20806) putative bHLH protein (At1g06170) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006307566.20.0transcription factor bHLH89
SwissprotQ9LND00.0BH089_ARATH; Transcription factor bHLH89
TrEMBLR0ID950.0R0ID95_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006307566.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06170.20.0bHLH family protein
Publications ? help Back to Top
  1. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]