PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10009158m
Common NameCARUB_v10009158mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 442aa    MW: 49666.5 Da    PI: 6.8849
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10009158mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.40.000143313641553
                      HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
              HLH  15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 
                      ++++++ +L++++ +      +K + a++L++A+ YI+ 
  Carubv10009158m 331 KLRDKITTLQQIVSPF-----GKTDTASVLQEAITYINF 364
                      7899999999999998.....8***************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.994316365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.32E-4330370No hitNo description
Gene3DG3DSA:4.10.280.106.9E-7331373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-9331381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MLREECTPSS SWWEDVQHHH NDHANSINST SFYHKSSNNN SNANVSCEED NLSISNVNAS  60
NRLDLTAESS NNHHHSLSAP SSSTDELLRD HVVSSHNQLW SLAFLPGRSL GDQMMDHHHH  120
NHNHHLTPSR NSSTTSELPS FEPACDNGNG WIYDTNQVRY DQSSDQRLSK LTDLVGKHWS  180
IAPPNNPDMN HNLHHHFDHD HSQTNEDVSM YRQALEVKNE ETLCYNNGST GAGAGSLFHD  240
PIESSRGFLD IRLSRPLSDI NPSFKPCFKA LNLSEFNKKE HQTASLATVR LGTTNAGKKK  300
RCEEVSDEVS KKAKCGGGST LSPEKELPKA KLRDKITTLQ QIVSPFGKTD TASVLQEAIT  360
YINFYQEQVK LLSTPYMKNS SVKDPWGGWD REDHNKRGPR QHLDLRSRGL CLVPISCTPI  420
AYRDNSATDY WSPSYRGSLY R*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10009158m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934880.0AB493488.1 Arabidopsis thaliana At1g31050 mRNA for hypothetical protein, partial cds, clone: RAAt1g31050.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006307534.10.0transcription factor bHLH111
SwissprotQ9FYJ60.0BH111_ARATH; Transcription factor bHLH111
TrEMBLR0GWX40.0R0GWX4_9BRAS; Uncharacterized protein
STRINGXP_006307533.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80551923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31050.10.0bHLH family protein