PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10009095m
Common NameCARUB_v10009095mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 456aa    MW: 49873.3 Da    PI: 6.7305
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10009095mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.18.6e-053363741255
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  Carubv10009095m 336 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 374
                      7788899*********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.827324373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.60E-5334378No hitNo description
SuperFamilySSF474597.07E-11334387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-8338381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MDSANLHQLQ DQLQLVGSSS SSSSLDNNSD PSCYGASSAH QWSPGGISLN SVSLSHNYNN  60
EMLNTRDHSS NNNTSECMSL STIHNHSLIQ QQDFPLQWPP YHHDQSSYHH HEGLLKIKEE  120
LSSSTISDQQ EGISKFTDML NSPVITNYLK INEHKDYTEK LLLKTISPGF PTNGDYCSSL  180
PSSSSSSSPS SRRGNFSQIY PSVNISSLSE SRKMSVDMSN NIPRPFDMNM QVFDGRLFEG  240
NVLVPPLNSQ EISNLGMSRG SFTPFGLPFH HHLQQTLHHP SSSSPSTHQM EMLSNIEPQT  300
SEGKRHNFLM ATKSGENASK KPRVESRSSC PPFKVRKEKL GDRIAALQQL VSPFGKTDTA  360
SVLMEAIGYI KFLQSQIETL SVPYMRASRN RPGKASQLGS QPQEGDEEET RDLRSRGLCL  420
VPLSCMSYVT GDGGEGGGGV GSGFWPTPPG FGGGT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10009095m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0123750.0AC012375.3 Genomic sequence for Arabidopsis thaliana BAC T22C5 from chromosome I, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006307469.10.0transcription factor bHLH110 isoform X1
SwissprotQ9SFZ30.0BH110_ARATH; Transcription factor bHLH110
TrEMBLR0GWQ10.0R0GWQ1_9BRAS; Uncharacterized protein
STRINGXP_006307469.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93512533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]