PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10009049m
Common NameCARUB_v10009049mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 470aa    MW: 53722.7 Da    PI: 6.512
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10009049mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM121.38.7e-3851383128
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      +Gf F+P+deelv +yL+ k++g++  l+ +i+ev+i++++PwdL+ + k+k+ +  wyfFs+r++ky +g+r+ r+t+sg Wk tg++ +v++
  Carubv10009049m   5 VGFGFRPNDEELVGHYLRDKIQGNTSLLQVAISEVNICSYDPWDLRyQsKYKSMDPMWYFFSRRENKYGNGNRQIRTTRSGKWKLTGESVDVKD 98 
                      7************************877667**************85246677777************************************** PP

              NAM  95 k......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +         ++g k++Lvf ++r p+  k+dWv+he++ 
  Carubv10009049m  99 QwgissgFPGKIGHKRVLVFLDARFPDKPKSDWVIHEFHY 138
                      97665443345***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100542.1023159IPR003441NAC domain
SuperFamilySSF1019412.22E-405159IPR003441NAC domain
PfamPF023651.3E-195137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MEDKVGFGFR PNDEELVGHY LRDKIQGNTS LLQVAISEVN ICSYDPWDLR YQSKYKSMDP  60
MWYFFSRREN KYGNGNRQIR TTRSGKWKLT GESVDVKDQW GISSGFPGKI GHKRVLVFLD  120
ARFPDKPKSD WVIHEFHYNY DLLPHHPKDT YVICRLEYKG NDKSILTANA TDPTPSFVPN  180
MANSAGSVVN QSRQGNSASY NTYSEHDSAN RGQQFNDNFN MQQLPVQGDL GSSFNHIFEY  240
GSANQGHQFG ANFNMVEGYS ESFNPFPEYD PTNYGQWSSH YSNLQQPVPN ESDFWKPVIE  300
ENFEFLVDER TSRTFMQEHY SDHQPKKPVT GTLPDDSSDN DSMTFGDTSS STDSVVSSNE  360
SYHTPMDDIP SLNTVKALHN YEAQEQPKQL KLQCQSKAKV INTQKSECEW KMAEDSIKRH  420
PSIITKTVKQ RWIVLEKRSQ RNAQSHCLKN MIIGVLLFIS IIGSMILVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-20616218171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10009049m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006307425.10.0NAC domain-containing protein 1
SwissprotQ0WV960.0NAC1_ARATH; NAC domain-containing protein 1
TrEMBLR0ISI20.0R0ISI2_9BRAS; Uncharacterized protein
STRINGXP_006307425.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76581640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01010.10.0NAC domain containing protein 1
Publications ? help Back to Top
  1. Davuluri RV, et al.
    AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors.
    BMC Bioinformatics, 2003. 4: p. 25
    [PMID:12820902]
  2. Palaniswamy SK, et al.
    AGRIS and AtRegNet. a platform to link cis-regulatory elements and transcription factors into regulatory networks.
    Plant Physiol., 2006. 140(3): p. 818-29
    [PMID:16524982]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]