PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10008993m

Common Name

CARUB_v10008993mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bZIP

Protein Properties

Length: 484aa MW: 54068.3 Da PI: 7.092

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10008993m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.8	6.2e-10	277	333	5	61
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l l+ l Carubv10008993m 277 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQSEATSLSAQLTLLQRDTNGLSV 333 9*******************************************9999877666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.1E-15	273	337	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.818	275	338	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.6E-10	277	331	No hit	No description
SuperFamily	SSF57959	1.13E-10	277	328	No hit	No description
Pfam	PF00170	2.3E-8	277	329	IPR004827	Basic-leucine zipper domain
CDD	cd14703	5.43E-24	278	327	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
MFFFFFFFAL LSRRIDLSAP HLSLSPSFPT YVLSSPFLWF RRSLFCFGVW RLLTRSLSWG 60 LGQVLGMEKE KSPAPPSGGL PPPSGRYSTF SPNGSSFAMK AESSFPHLTP TGSSSSDANR 120 FSHDISRMPD NPPKNLGHRR AHSEILTLPD DLSFDSDLGV VGAADGPSFS DDTDEDLMFM 180 YLDMDKFNSS ATSTSQMGEP SEPAWRNELG STSNLQSTPG SSSERPRIRH QHSQSMDGST 240 TIKPEMLMSG NEDVSGVDSK KAISAAKLSE LALIDPKRAK RIWANRQSAA RSKERKMRYI 300 AELERKVQTL QSEATSLSAQ LTLLQRDTNG LSVENNELKL RVQTMEQQVH LQDALNDALK 360 EEVQHLKVLT GQGTPNGASM MNYGSFGPNQ QFYPNNQSMH TVLAAQQFQQ LQIQSQKQQQ 420 QQQQQQQQFQ FQQQQLYQLQ QQQQRLQQQE QQSGASELRR PMPSQGQKES VASPDLEASS 480 TKD*

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

MFFFFFFFAL LSRRIDLSAP HLSLSPSFPT YVLSSPFLWF RRSLFCFGVW RLLTRSLSWG  60
LGQVLGMEKE KSPAPPSGGL PPPSGRYSTF SPNGSSFAMK AESSFPHLTP TGSSSSDANR  120
FSHDISRMPD NPPKNLGHRR AHSEILTLPD DLSFDSDLGV VGAADGPSFS DDTDEDLMFM  180
YLDMDKFNSS ATSTSQMGEP SEPAWRNELG STSNLQSTPG SSSERPRIRH QHSQSMDGST  240
TIKPEMLMSG NEDVSGVDSK KAISAAKLSE LALIDPKRAK RIWANRQSAA RSKERKMRYI  300
AELERKVQTL QSEATSLSAQ LTLLQRDTNG LSVENNELKL RVQTMEQQVH LQDALNDALK  360
EEVQHLKVLT GQGTPNGASM MNYGSFGPNQ QFYPNNQSMH TVLAAQQFQQ LQIQSQKQQQ  420
QQQQQQQQFQ FQQQQLYQLQ QQQQRLQQQE QQSGASELRR PMPSQGQKES VASPDLEASS  480
TKD*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00126	DAP	Transfer from AT1G06070	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10008993m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ419854	0.0	AJ419854.1 Arabidopsis thaliana mRNA for AtbZIP transcription factor.
GenBank	AK229666	0.0	AK229666.1 Arabidopsis thaliana mRNA for bZip transcription factor AtbZip69, complete cds, clone: RAFL19-85-B03.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023645254.1	0.0	probable transcription factor PosF21
Refseq	XP_023645255.1	0.0	probable transcription factor PosF21
Swissprot	Q04088	1e-179	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	R0INM3	0.0	R0INM3_9BRAS; Uncharacterized protein
STRING	XP_006307367.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2445	27	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	0.0	bZIP family protein

Link Out ? help Back to Top
Phytozome	Carubv10008993m
Entrez Gene	17898207

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]