PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10008621m
Common NameCARUB_v10008621mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HD-ZIP
Protein Properties Length: 607aa    MW: 67684.3 Da    PI: 6.4709
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10008621mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.81e-1966122157
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                      +++ +++t+ q++e+e++F+++++p+ ++r++L+++lgL+  qVk+WFqN+R+++k+
  Carubv10008621m  66 KKRYHRHTQLQIQEMEAFFKECPHPDDKQRKQLSRELGLEPLQVKFWFQNKRTQMKN 122
                      688999************************************************995 PP
2START2244.8e-702534662206
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                      la +a++el+++a++++p+W++++  ++ +e+ ++f+++ +     +++ea+r+++vv+m++++ ve+l+d++ qW++ +a    +a+tl+v+s
  Carubv10008621m 253 LAVAAMEELMRMAQVDDPMWKSLV--LDDEEYARTFPRGIGprpagFRSEASRETAVVIMNHVNIVEILMDVN-QWSTIFAgmvsRAMTLAVLS 343
                      6789********************..************999********************************.******************** PP

                      TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
            START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlk 173
                      +g      galq+m+ae+q++splvp R+ +f+Ry++q+g+g+w++vd+S+ds q++p     +R++++ Sg+li++++ng+skvtwvehv+++
  Carubv10008621m 344 TGvagnfnGALQVMTAEFQVPSPLVPtRETYFARYCKQQGDGSWAVVDISLDSLQPNPP----ARCRRRASGCLIQEMPNGYSKVTWVEHVEVD 433
                      **********************************************************8....******************************* PP

                      SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 174 grlphwllrslvksglaegaktwvatlqrqcek 206
                      +r +h+l++++v++g+a+gak+wva l+rqce+
  Carubv10008621m 434 DRGVHNLYKHMVSTGHAFGAKRWVAILDRQCER 466
                      *******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.4E-2244121IPR009057Homeodomain-like
SuperFamilySSF466893.63E-1954123IPR009057Homeodomain-like
PROSITE profilePS5007116.47163123IPR001356Homeobox domain
SMARTSM003891.6E-1864127IPR001356Homeobox domain
CDDcd000862.20E-1866124No hitNo description
PfamPF000462.6E-1766121IPR001356Homeobox domain
PROSITE patternPS00027098121IPR017970Homeobox, conserved site
SuperFamilySSF559614.4E-34243468No hitNo description
PROSITE profilePS5084842.001243469IPR002913START domain
CDDcd088752.39E-124247465No hitNo description
SMARTSM002349.1E-61252466IPR002913START domain
PfamPF018522.5E-62253466IPR002913START domain
Gene3DG3DSA:3.30.530.202.3E-5342432IPR023393START-like domain
SuperFamilySSF559614.47E-14485602No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010090Biological Processtrichome morphogenesis
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MFEPNMLLAA MNNADSNNHN YNHHEDNNNE GFLRDDEFDS ANTKSGSENQ EGGSGNDQDP  60
LHPNKKKRYH RHTQLQIQEM EAFFKECPHP DDKQRKQLSR ELGLEPLQVK FWFQNKRTQM  120
KNHHERHENS HLRAENEKLR SDNLRYREAL ANASCPNCGG PTAIGEMSFD EHQLRLENAR  180
LREEIDRISA IAAKYVGKPV SNYPLMSPPP LPPRPLELAM GNIGGEAYGN NPTDLLKSIT  240
TPTEADKPVI IDLAVAAMEE LMRMAQVDDP MWKSLVLDDE EYARTFPRGI GPRPAGFRSE  300
ASRETAVVIM NHVNIVEILM DVNQWSTIFA GMVSRAMTLA VLSTGVAGNF NGALQVMTAE  360
FQVPSPLVPT RETYFARYCK QQGDGSWAVV DISLDSLQPN PPARCRRRAS GCLIQEMPNG  420
YSKVTWVEHV EVDDRGVHNL YKHMVSTGHA FGAKRWVAIL DRQCERLASV MATNVSSGEV  480
GVITNQEGRR SMLKLAERMV ISFCAGVSAS TAHTWTTLSG TGAEDVRVMT RKSVDDPGRP  540
PGIVLSAATS FWIPVPPKRV FDFLRDENSR NEWDILSNGG VVQEMAHIAN GRDTGNCVSL  600
LRVNVS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10008621m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3167760.0AK316776.1 Arabidopsis thaliana AT1G05230 mRNA, complete cds, clone: RAFL09-78-H10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023632762.10.0homeobox-leucine zipper protein HDG2 isoform X1
RefseqXP_023632763.10.0homeobox-leucine zipper protein HDG2 isoform X1
RefseqXP_023632764.10.0homeobox-leucine zipper protein HDG2 isoform X1
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLR0IBT60.0R0IBT6_9BRAS; Uncharacterized protein
STRINGCagra.1671s0144.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49128149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2