PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10008300m

Common Name

CARUB_v10008300mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Nin-like

Protein Properties

Length: 845aa MW: 94033.8 Da PI: 5.1413

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10008300m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.9	4.9e-29	556	606	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ Carubv10008300m 556 DKTITLDVLRQYFAGSLKDAAKNIGVCPTTLKRICRQHGIQRWPSRKIKKV 606 689**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.154	540	626	IPR003035	RWP-RK domain
Pfam	PF02042	3.3E-25	558	606	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.26E-22	735	831	No hit	No description
SMART	SM00666	7.7E-26	744	827	IPR000270	PB1 domain
PROSITE profile	PS51745	28.503	744	827	IPR000270	PB1 domain
CDD	cd06407	1.82E-41	745	825	No hit	No description
Gene3D	G3DSA:3.10.20.240	8.3E-21	745	824	No hit	No description
Pfam	PF00564	1.1E-19	745	826	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 845 aa Download sequence Send to blast
MEDSFLQTEN AVMDSEFMDG LLLDGCWLET TDGSEFLNVA PSTSSVSPFD PSSFMWSPTQ 60 DTSAICTSGV VSTMYGQDCV ERSSLDDFQW NKRWWIGPGG GGSVTERLVQ AVEHIKDYTT 120 ERGSLIQLWV PVNRGGKRVL TTKEQPFSHD PMCQRLANYR EISVNYHFSA EQDDSKALAG 180 LPGRVFLGKL PEWTPDVRFF KSEEYPRVHH AQDCGVRGTL AIPVFEQGSK ICLGVIEVVM 240 TTEMVKLRPE LESICKALQA VDLRSTELPI PASLTGCDLS YKAALPEIRN LLRCACETHK 300 LPLAQTWVSC LQQNKSGCRH NDENYIHCVS TIEDACYVGD PTVREFHEAC SEHHLLKGQG 360 VAGQAFMTNG PCFSSDVSNY KKSEYPLSHH ANMYGLHGAV AIRLRCIHTG SADFVLEFFL 420 PKDCDDLEEQ RKMLNALSTI MAHVPRSLRT VTDKELEEES VVIEREDIVT PKIENASELQ 480 HLHDNSPWSA SLEEIQSNNT SNSQNLGLVF DGDKPNDGFG LKRGFDYTMD SNVNESGTFS 540 SGGFSMMAEK KRTKADKTIT LDVLRQYFAG SLKDAAKNIG VCPTTLKRIC RQHGIQRWPS 600 RKIKKVGHSL QKIQRVIDSV QGVSGPLPIG SFYANFPNLV SQSQEPSQQA KTSPPPPPPV 660 QLAKSPVSSY SQSSNSSQCC SSETQLNSGA TTDPASADVG GLLKKTSSEI ELQSSSLDET 720 ILTLSSLENV PQGTNLISSQ DDDFLRIKVS YGEEKIRLRM RNSRKLTDLL WEIGKRFSIE 780 DMSRYDLKYL DEDNEWVLLT CDEDVEECVD VCRTTPSQTI KLLLQVSSHQ FPERSSATEY 840 SLWH*

Sequence ? help Back to Top

Protein Sequence Length: 845 aa Download sequence Send to blast

MEDSFLQTEN AVMDSEFMDG LLLDGCWLET TDGSEFLNVA PSTSSVSPFD PSSFMWSPTQ  60
DTSAICTSGV VSTMYGQDCV ERSSLDDFQW NKRWWIGPGG GGSVTERLVQ AVEHIKDYTT  120
ERGSLIQLWV PVNRGGKRVL TTKEQPFSHD PMCQRLANYR EISVNYHFSA EQDDSKALAG  180
LPGRVFLGKL PEWTPDVRFF KSEEYPRVHH AQDCGVRGTL AIPVFEQGSK ICLGVIEVVM  240
TTEMVKLRPE LESICKALQA VDLRSTELPI PASLTGCDLS YKAALPEIRN LLRCACETHK  300
LPLAQTWVSC LQQNKSGCRH NDENYIHCVS TIEDACYVGD PTVREFHEAC SEHHLLKGQG  360
VAGQAFMTNG PCFSSDVSNY KKSEYPLSHH ANMYGLHGAV AIRLRCIHTG SADFVLEFFL  420
PKDCDDLEEQ RKMLNALSTI MAHVPRSLRT VTDKELEEES VVIEREDIVT PKIENASELQ  480
HLHDNSPWSA SLEEIQSNNT SNSQNLGLVF DGDKPNDGFG LKRGFDYTMD SNVNESGTFS  540
SGGFSMMAEK KRTKADKTIT LDVLRQYFAG SLKDAAKNIG VCPTTLKRIC RQHGIQRWPS  600
RKIKKVGHSL QKIQRVIDSV QGVSGPLPIG SFYANFPNLV SQSQEPSQQA KTSPPPPPPV  660
QLAKSPVSSY SQSSNSSQCC SSETQLNSGA TTDPASADVG GLLKKTSSEI ELQSSSLDET  720
ILTLSSLENV PQGTNLISSQ DDDFLRIKVS YGEEKIRLRM RNSRKLTDLL WEIGKRFSIE  780
DMSRYDLKYL DEDNEWVLLT CDEDVEECVD VCRTTPSQTI KLLLQVSSHQ FPERSSATEY  840
SLWH*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00154	DAP	Transfer from AT1G20640	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10008300m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY091015	0.0	AY091015.1 Arabidopsis thaliana putative nodule inception protein (At1g20640) mRNA, complete cds.
GenBank	AY117237	0.0	AY117237.1 Arabidopsis thaliana putative nodule inception protein (At1g20640) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006306759.1	0.0	protein NLP4
Swissprot	Q9LE38	0.0	NLP4_ARATH; Protein NLP4
TrEMBL	R0GUM3	0.0	R0GUM3_9BRAS; Uncharacterized protein
STRING	XP_006306759.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3461	26	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Carubv10008300m
Entrez Gene	17897522