PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10008145m
Common NameCARUB_v10008145mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NF-X1
Protein Properties Length: 1107aa    MW: 121640 Da    PI: 8.0505
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10008145mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X1223.4e-07328346119
         zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                      CG+H+C++ CH GpC++C+
  Carubv10008145m 328 CGRHRCERACHVGPCDSCQ 346
                      ******************6 PP
2zf-NF-X117.49.6e-06548566119
         zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                      CG+H+C+ lCH+G CppC 
  Carubv10008145m 548 CGQHSCETLCHTGHCPPCL 566
                      ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.62E-6150220No hitNo description
PROSITE profilePS500168.849158219IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.716161217IPR001841Zinc finger, RING-type
PROSITE patternPS013590161216IPR019786Zinc finger, PHD-type, conserved site
CDDcd060081.67E-5250311No hitNo description
SMARTSM004380.023273291IPR000967Zinc finger, NF-X1-type
PfamPF014228.3275290IPR000967Zinc finger, NF-X1-type
CDDcd060086.82E-12318366No hitNo description
PfamPF014222.3E-5328345IPR000967Zinc finger, NF-X1-type
SMARTSM004383.3E-4328347IPR000967Zinc finger, NF-X1-type
CDDcd060086.94E-7382427No hitNo description
PfamPF014222.8E-4392409IPR000967Zinc finger, NF-X1-type
SMARTSM004380.002392411IPR000967Zinc finger, NF-X1-type
CDDcd060084.75E-13440488No hitNo description
PfamPF014220.0031450467IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0049450469IPR000967Zinc finger, NF-X1-type
PfamPF0142218508519IPR000967Zinc finger, NF-X1-type
SMARTSM00438110508544IPR000967Zinc finger, NF-X1-type
CDDcd060087.60E-8541590No hitNo description
PfamPF014226.1E-4548565IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0038548567IPR000967Zinc finger, NF-X1-type
CDDcd060084.03E-6595642No hitNo description
PfamPF0142223605622IPR000967Zinc finger, NF-X1-type
SMARTSM004380.13605623IPR000967Zinc finger, NF-X1-type
PfamPF014220.01658673IPR000967Zinc finger, NF-X1-type
SMARTSM004380.018658689IPR000967Zinc finger, NF-X1-type
CDDcd060089.68E-5687736No hitNo description
PfamPF0142213691717IPR000967Zinc finger, NF-X1-type
SMARTSM004380.039698719IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3305.8E-4945989IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1107 aa     Download sequence    Send to blast
MSSQVRRDRR ERPRFTSRTT QQTWVPRGTS STSVVVNETP FPLDANTNSG NLDDAGARPG  60
PVYQQRQHYE SAPLLNDPRQ RSNVPGPPSY SRQRRNNVSR PVLDNRQRGG DRGRLPRTGN  120
EGTGLDRERN KHNENTMMTD PNLPQLLQEI QDKLMKGSIE CMICYDMVRR SANIWSCSSC  180
YSIFHLNCIK KWARAPTSVD LLADKNQGSN WRCPGCQFVQ LTSSKEIQYR CFCGKRKDPP  240
SDPYLTPHSC GDICGKPLEK EFATAATVKE NTCPHVCVLQ CHPGPCPPCK AFAPPRNCPC  300
GKKMIRTRCS ERKYDLTCGQ SCDKLLNCGR HRCERACHVG PCDSCQVQVN ASCFCKKTVE  360
SVICGEMNVK GEVTAEDGVF SCKLNCRKQL ECGNHECRDV CHPGPCGDCE FLPSRIKACY  420
CGKTSLEEER QSCLDPIPSC SNICSKLLPC GLHNCNEMCH PGGCSPCLVQ VRQKCRCGST  480
SRTVECYKTV SETEKFICAK PCGRKKNCGR HRCSERCCPL LNHPKNDDLS GDSDLHFCHI  540
PCGKRLRCGQ HSCETLCHTG HCPPCLEMIF TDLACACGKT SIPPPLPCGT PVPSCQLPCS  600
VPQPCGHSAT HGCHFGDCMP CSVPVEKKCI GGHVVLRNIP CGLKDIRCNK ICGKTRCCGM  660
HACARTCHPE PCDNGGNASV TGLRVTCGQT CGAPRRDCRH TCAALCHPSA PCPDQRCEFP  720
LKITCSCGRI TATVPCDAGG SAGGFSGDSI YETSILQKLP VPLQPVESNG NRIPLGQRKL  780
TCDEECAKLE RKRVLQDAFD ITPPNLDALH FGENTAMTEV ILDLYRRDPK WVLAVEERCK  840
FLVLGKARGS TISSLKLHIF CTMEKDKRDA VRLIAERWKL AVSNAGWEPK RFVVVYVTQK  900
SKPPTRIIGV KGVISVGAPH APAFDPLVDM DSRLVVCFFD LPREANISAL VLRFGGECEL  960
VWLNDKNALA VFHDPARAAT AMRRLEHGSV YQGAVVVVQN PGQSPSLSNA WGIPGSSVQK  1020
GNPWNKAVVK ELDDSWETED SPIGGSMWKT AKDSDLITPN RWTILESDKA VSVEPLAQTE  1080
GTSSSEAAGK QPEETSVVDD WEKVCD*
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10008145m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006306627.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLR0ILT00.0R0ILT0_9BRAS; Uncharacterized protein
STRINGXP_006306627.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59552647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1