PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10007787m
Common NameCARUB_v10007787mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 281aa    MW: 31683.4 Da    PI: 5.3676
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10007787mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.16.8e-2196145255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a++ a+ kl+g
  Carubv10007787m  96 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAAMAYDLAAYKLRG 145
                      59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.11E-3495153No hitNo description
PROSITE profilePS5103223.45996153IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-2396153IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-3196154IPR001471AP2/ERF domain
SMARTSM003801.9E-3696159IPR001471AP2/ERF domain
PfamPF008471.2E-1497145IPR001471AP2/ERF domain
PRINTSPR003672.0E-1197108IPR001471AP2/ERF domain
PRINTSPR003672.0E-11119135IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MAAIDMFNSN TDLSDPFKEE LMKALQPLTN TVSSSSPSPY SNTVFGFNQT TPLGLNQLTP  60
YQIHQIQNQL NQRRNTIPPN LAPKPVPMKS MATQKLYRGV RQRHWGKWVA EIRLPKNRTR  120
LWLGTFDTAE EAAMAYDLAA YKLRGGFARL NFPQFRHEDG YYGGGSCFNP LHSSVDAKLQ  180
AICQSLRKTE DDHHHLPCSE TELFPPKTEY QETEYGFLRS VVNSFSDESQ VESSSPESCI  240
TNTTFLDFSD PGFDEFGSFG LEKFPSVEID WDAISKLSES *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2192153163ATERF1
3gcc_A2e-2192153163ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10007787m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0226050.0AL022605.3 Arabidopsis thaliana DNA chromosome 4, BAC clone T19P19 (ESSA project).
GenBankAL1615950.0AL161595.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 91.
GenBankBT0257190.0BT025719.1 Arabidopsis thaliana At4g39780 mRNA, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006286220.10.0ethylene-responsive transcription factor ERF060
SwissprotO656651e-179ERF60_ARATH; Ethylene-responsive transcription factor ERF060
TrEMBLR0H6F00.0R0H6F0_9BRAS; Uncharacterized protein
STRINGXP_006286220.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26802768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.11e-152ERF family protein