PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10007732m | ||||||||
Common Name | CARUB_v10007732mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB | ||||||||
Protein Properties | Length: 263aa MW: 30108.3 Da PI: 7.9724 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42 | 2.2e-13 | 12 | 59 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l ++ +G +W+ ++ + g+ R +k+c++rw +yl Carubv10007732m 12 KGLWSPEEDEKLRSCILSHGHSCWTNVPIKAGLQRNGKSCRLRWINYL 59 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 44 | 5.2e-14 | 69 | 110 | 5 | 48 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++eE+e ++ + lG++ W+ Ia+ ++ gRt++++k++w+++l Carubv10007732m 69 SAEEEETILTFHSSLGNK-WSQIAKFLP-GRTDNEIKNYWHSHL 110 89****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.29 | 7 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.24E-27 | 11 | 106 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.7E-10 | 11 | 61 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.2E-12 | 12 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-20 | 13 | 66 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.12E-7 | 15 | 59 | No hit | No description |
PROSITE profile | PS51294 | 16.816 | 64 | 114 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-12 | 64 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-23 | 67 | 113 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.89E-9 | 69 | 110 | No hit | No description |
Pfam | PF00249 | 2.3E-12 | 69 | 110 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010018 | Biological Process | far-red light signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MAKTKSGEKQ RKGLWSPEED EKLRSCILSH GHSCWTNVPI KAGLQRNGKS CRLRWINYLR 60 PGLKRDMISA EEEETILTFH SSLGNKWSQI AKFLPGRTDN EIKNYWHSHL KKRWLKSHNL 120 QHPKSISSSS SSLVSCQKRN PETLISNHVI SFQRLVENKS SSPSQESNGN NNSHQCSSAP 180 EFPRLFFNEW LSSSSDPQVD DSSVFTDSKH DQAPNVENSV LDYEETSDVD QFHYNETMIN 240 NNNWTLNDVV FGSKFQKHES QN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-22 | 12 | 113 | 7 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10007732m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY519609 | 0.0 | AY519609.1 Arabidopsis thaliana MYB transcription factor (At4g25560) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006286169.1 | 0.0 | transcription factor LAF1 | ||||
Swissprot | Q9M0K4 | 1e-152 | LAF1_ARATH; Transcription factor LAF1 | ||||
TrEMBL | R0FAN0 | 0.0 | R0FAN0_9BRAS; Uncharacterized protein | ||||
STRING | XP_006286169.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25560.1 | 1e-146 | myb domain protein 18 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10007732m |
Entrez Gene | 17879343 |
Publications ? help Back to Top | |||
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