PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10007629m | ||||||||
Common Name | CARUB_v10007629mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | GeBP | ||||||||
Protein Properties | Length: 157aa MW: 17812.2 Da PI: 4.4604 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 33.5 | 1.2e-10 | 9 | 55 | 18 | 64 |
DUF573 18 GlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkK 64 G+++++++t++ + +d+dafy ++++s+ +++sk q++ K LK+ Carubv10007629m 9 GILEYQSETETCYNQDWDAFYGYIRESMRSDFSKAQIMGKCLVLKEE 55 99**************************************9999975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MNLMRTSPGI LEYQSETETC YNQDWDAFYG YIRESMRSDF SKAQIMGKCL VLKEEDVPCA 60 ENERVVGNEN TKIDNVEEED GADDLCVIKN ALEAAASYRS LSEDLRKVLF RKLKNVGADR 120 RKELADGWKA LFAADMELDI KKRDFFAMLL NLGFSA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10007629m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019089206.1 | 2e-47 | PREDICTED: GLABROUS1 enhancer-binding protein-like | ||||
TrEMBL | R0GQ38 | 1e-110 | R0GQ38_9BRAS; Uncharacterized protein | ||||
STRING | XP_006286086.1 | 1e-111 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14516 | 8 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36340.1 | 3e-15 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Carubv10007629m |
Entrez Gene | 17880072 |