PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10007498m

Common Name

CARUB_v10007498mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

C2H2

Protein Properties

Length: 317aa MW: 33436.8 Da PI: 4.4893

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10007498m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.6	4.5e-05	182	203	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C++C++ F ++ H+r H Carubv10007498m 182 VCHICDRAFGSWKAVFGHMRAH 203 6*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	183	203	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MTDKPEKMKA VDDTDGERDV SDEQLSDDES ETREIVLGLP ALSITSRIFG DLSSVSETDE 60 EEAPMKEQDE AALKEQEEAC SKEQEEACSK EQEEAALKNQ EQVRLNEQAV VAAELVMAMA 120 EEAVMKGKSD EGGSGGKMKK KKSRPRTSTK TDDEADGSGT GEAKKPKKKG SQLNHPPKGP 180 PVCHICDRAF GSWKAVFGHM RAHRDRSYQG FLPPPTFSAA AEMIAVPGRK SAFVLLTAGG 240 GSSGGNINAS GGGIPDEASA SGVGRVPGEG GGRSLGLDLN AEPVEKGEEA TESGSIAKFD 300 LNKSPPKDDD DEKNGN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10007498m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006285977.1	0.0	uncharacterized protein LOC17880279
TrEMBL	R0H2J1	0.0	R0H2J1_9BRAS; Uncharacterized protein
STRING	XP_006285977.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5875	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35610.1	8e-65	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Carubv10007498m
Entrez Gene	17880279