PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10007269m | ||||||||
Common Name | CARUB_v10007269mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | ZF-HD | ||||||||
Protein Properties | Length: 342aa MW: 36851.7 Da PI: 8.6342 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 107.2 | 9.4e-34 | 59 | 115 | 4 | 59 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 ++YkeClkNhAa+lGgha+DGCgEfmps+++ +++++lkCaACgCHRnFHRr++++ Carubv10007269m 59 FTYKECLKNHAAALGGHALDGCGEFMPSPSSIsSDPTSLKCAACGCHRNFHRRDPDN 115 68**************************9999899******************9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 8.0E-10 | 56 | 111 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 7.1E-28 | 60 | 113 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.9E-31 | 60 | 112 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.629 | 61 | 112 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 5.45E-19 | 193 | 265 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.9E-29 | 195 | 265 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.6E-25 | 204 | 261 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MMDMTPTPIS PPTTTTTTPT PKSPEPESET PTRIQPAKPI SFSNGIIKRH HHHHHPILFT 60 YKECLKNHAA ALGGHALDGC GEFMPSPSSI SSDPTSLKCA ACGCHRNFHR RDPDNNNNDI 120 SSSLLPPPPS SAVEYQPHHR HHPPPPPLPP PPPRSPNSAS PPPISSSYML LSLSGTNNNN 180 NNNLASFSDL NFSGHHQHNL HGSRKRFRTK FSQFQKEKMH EFAERLGWKM QKRDEDDVRE 240 FCRQIGVDKS VLKVWMHNNK NTFNRRDFAG AEIRKIDNGG GNHAPVLTGE INSNGNGHHG 300 VGGGGGVELH HSVSSGGGGG GFDSDSGGVH GGGNVNGSSS S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 4e-21 | 203 | 262 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Probably involved in establishing polarity during leaf development through the gibberellic acid (GA) signaling pathway. {ECO:0000269|PubMed:17387478}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00536 | DAP | Transfer from AT5G39760 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10007269m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By gibberellic acid (GA). {ECO:0000269|PubMed:17387478}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB016876 | 0.0 | AB016876.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKM21. | |||
GenBank | AK228484 | 0.0 | AK228484.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL15-09-C01. | |||
GenBank | AY091034 | 0.0 | AY091034.1 Arabidopsis thaliana unknown protein (At5g39760) mRNA, complete cds. | |||
GenBank | AY117347 | 0.0 | AY117347.1 Arabidopsis thaliana unknown protein (At5g39760) mRNA, complete cds. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006285795.1 | 0.0 | zinc-finger homeodomain protein 10 | ||||
Swissprot | Q9FIW9 | 1e-120 | ZHD10_ARATH; Zinc-finger homeodomain protein 10 | ||||
TrEMBL | R0H571 | 0.0 | R0H571_9BRAS; Uncharacterized protein | ||||
STRING | XP_006285795.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2220 | 25 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28920.1 | 2e-57 | homeobox protein 34 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10007269m |
Entrez Gene | 17879120 |
Publications ? help Back to Top | |||
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