PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10007255m | ||||||||
Common Name | CARUB_v10007255mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB | ||||||||
Protein Properties | Length: 263aa MW: 30301.3 Da PI: 9.3766 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.9 | 5.4e-19 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll+++v+ +G g+W+++ar g++R +k+c++rw +yl Carubv10007255m 8 KGPWTAEEDRLLIEYVRVHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 55 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.4 | 6e-17 | 61 | 105 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++ Carubv10007255m 61 RGQITPHEESIIIELHAKWGNR-WSTIARSLP-GRTDNEIKNYWRTH 105 7888******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.362 | 1 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.58E-30 | 7 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-16 | 7 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-17 | 8 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-24 | 9 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.32E-12 | 10 | 55 | No hit | No description |
PROSITE profile | PS51294 | 25.018 | 56 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 2.6E-15 | 60 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-14 | 61 | 105 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-24 | 63 | 109 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.16E-11 | 65 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MVEEVWRKGP WTAEEDRLLI EYVRVHGEGR WNSVARLAGL KRNGKSCRLR WVNYLRPDLK 60 RGQITPHEES IIIELHAKWG NRWSTIARSL PGRTDNEIKN YWRTHFKKKA KPTTNNVEKT 120 KSRLLKREQF KQQRELEMQQ EQQLFQFDQL DMKKIISLLE DNNSTSSSDC GSNGNVFYAP 180 HQVTHSSKPF GYNPNLLEEQ LQGRLAPVNI LDANTTNEDN AIWDGLWNMD IVDGHGGMSV 240 VAATSACGPR KPYFHNLVIP FC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-26 | 8 | 110 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10007255m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY133705 | 0.0 | AY133705.1 Arabidopsis thaliana clone C103160 putative myb protein (At4g13480) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006285781.2 | 0.0 | transcription repressor MYB6 | ||||
TrEMBL | R0GP77 | 0.0 | R0GP77_9BRAS; Uncharacterized protein | ||||
STRING | XP_006285781.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3107 | 27 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13480.1 | 1e-149 | myb domain protein 79 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10007255m |
Entrez Gene | 17879444 |