PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10007218m
Common NameCARUB_v10007218mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HD-ZIP
Protein Properties Length: 677aa    MW: 75696.6 Da    PI: 6.5534
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10007218mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox46.84.9e-15631021756
                      HHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  17 elFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +lFe+n++ps+e+r  L+k+lgLt +qVk+WFqN+R++ k
  Carubv10007218m  63 RLFEENPHPSEEKRLNLSKELGLTPQQVKFWFQNKRTQLK 102
                      68**********************************9877 PP
2START1333.3e-421994291206
                      HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S. CS
            START   1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv...........dsgealrasgvvdmvlallveellddkeqWdetla. 77 
                      ela ++aqelvk+ + +ep+W++ +       +n++e+ +                  ++ ea+ra++vv m++  lv+ +ld   +W+e +  
  Carubv10007218m 199 ELAVSCAQELVKMCETNEPLWTQKRlddenGCLNEEEYKK------MflwppktdddrFRREASRAKAVVMMNSISLVQAFLDAD-KWSELFCs 285
                      57899********************766664444444444......3344445566788**************************.****9999 PP

                      ...EEEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-......TTS--....-TTSEE-EESSEEE CS
            START  78 ...kaetlevissg.....galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvds......eqkppe...sssvvRaellpSgi 152
                         +a+t++vissg     g l lm+a lq+ splvp R+ +f+Ry +q  ++ +w+ivd  +ds      ++   +   +  + R  + pSg+
  Carubv10007218m 286 ivsSAKTIQVISSGvsgasGSLLLMYAGLQVVSPLVPtREAYFLRYVEQkAEERKWMIVDFPIDSfhgfikPA---StatTTDLYR--RKPSGC 374
                      999**********************************************99999******9998732222222...1344677777..8***** PP

                      EEEEECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 153 liepksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                      +i++++ng+s+vtw+ehv+++++++  +++r  vksg+a+g+ +w+a l+rqce+
  Carubv10007218m 375 IIQEMPNGYSEVTWLEHVEVEEKHVlGEVVREYVKSGVAFGVERWLAVLKRQCER 429
                      *************************9***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.93E-1324104IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.6E-1624104IPR009057Homeodomain-like
CDDcd000867.48E-1434105No hitNo description
SMARTSM003892.8E-1046108IPR001356Homeobox domain
PfamPF000461.7E-1263102IPR001356Homeobox domain
PROSITE profilePS5007114.60965104IPR001356Homeobox domain
PROSITE patternPS00027079102IPR017970Homeobox, conserved site
PROSITE profilePS5084841.78190432IPR002913START domain
SuperFamilySSF559612.06E-28191431No hitNo description
CDDcd088751.15E-95194428No hitNo description
SMARTSM002342.3E-27199429IPR002913START domain
PfamPF018525.1E-35200429IPR002913START domain
SuperFamilySSF559611.51E-9476665No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MMSMIESGSG VSTGSGHNLF EDTAIEQEPP PAKKRSYHRH TLHHIQQMEA YTMLYELVFY  60
CIRLFEENPH PSEEKRLNLS KELGLTPQQV KFWFQNKRTQ LKAHQDRRYH VMLKAENATL  120
KVESQNLQSS SLCLSCSSCG YNLRLENIRL RQELDRLRHI VSMRNPPPSQ DIACFFPETN  180
NDNNKNMLIA EEEKAIAMEL AVSCAQELVK MCETNEPLWT QKRLDDENGC LNEEEYKKMF  240
LWPPKTDDDR FRREASRAKA VVMMNSISLV QAFLDADKWS ELFCSIVSSA KTIQVISSGV  300
SGASGSLLLM YAGLQVVSPL VPTREAYFLR YVEQKAEERK WMIVDFPIDS FHGFIKPAST  360
ATTTDLYRRK PSGCIIQEMP NGYSEVTWLE HVEVEEKHVL GEVVREYVKS GVAFGVERWL  420
AVLKRQCERM ASLMATNITD LGVIPSVEAR RNLIKLSQTM VKTFCLNISN SYGQGSTKDT  480
LRILTRKVCG GLVPCAVSVT YLPYSHHKVF DLLRNNQRLS QLEILFNGSS FQEVAHIANG  540
SHPGNCISLL RINVESNSSH NVELMLQETC TDSSGSLLVY STVDADAVQL AMNGEDPSKV  600
PLLPVGFSIV PVNPSDGVEG ISVNLPSCLL TVAIQVLGSN AVAAERLDLS TVSAINNRIC  660
ATVNRITSAL VNDVGN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10007218m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023633855.10.0homeobox-leucine zipper protein HDG4
SwissprotQ8L7H40.0HDG4_ARATH; Homeobox-leucine zipper protein HDG4
TrEMBLR0GP440.0R0GP44_9BRAS; Uncharacterized protein
STRINGXP_006285746.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43562548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17710.10.0homeodomain GLABROUS 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]