PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10007153m | ||||||||
Common Name | CARUB_v10007153mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | Dof | ||||||||
Protein Properties | Length: 251aa MW: 28304.6 Da PI: 7.8918 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 107.4 | 7.7e-34 | 21 | 78 | 4 | 61 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++ cprC+s+ntkfCy+nny sqPry Ck+Crr+Wt+GGalrnvP+Ggg+rk kk+ Carubv10007153m 21 PHRVCPRCHSDNTKFCYFNNYRKSQPRYNCKNCRRHWTHGGALRNVPIGGGSRKIKKV 78 5678**************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-21 | 20 | 77 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.8E-30 | 23 | 77 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 26.934 | 23 | 77 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 25 | 61 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MDNLLVFADE DTNPRNGEKP PHRVCPRCHS DNTKFCYFNN YRKSQPRYNC KNCRRHWTHG 60 GALRNVPIGG GSRKIKKVRV EQPPASRGMI PHDIQQFNPQ HFPYLQENND FVGSFGAAAP 120 FGNHFGLFPD LHGGMLANVP PFQSFLPNYL IDYQDVSFEQ DFYDVGSVNP MINQSIGGGY 180 VDNPNGYLIS QVDQYEWSQL SFNNTAIMDP GASTSGSRGP EDMTVTSDNI KRLKYNRVIK 240 HPCHLEKHGP * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00446 | DAP | Transfer from AT4G21080 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10007153m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006282900.1 | 0.0 | dof zinc finger protein DOF4.3 | ||||
Swissprot | O49550 | 7e-69 | DOF45_ARATH; Dof zinc finger protein DOF4.5 | ||||
TrEMBL | R0GXA8 | 0.0 | R0GXA8_9BRAS; Uncharacterized protein | ||||
STRING | XP_006282900.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1602 | 17 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21080.1 | 3e-71 | Dof-type zinc finger domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10007153m |
Entrez Gene | 17878285 |