PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10007115m | ||||||||
Common Name | CARUB_v10007115mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | GATA | ||||||||
Protein Properties | Length: 520aa MW: 57998.3 Da PI: 7.6439 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 50.1 | 3.8e-16 | 7 | 41 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ Carubv10007115m 7 CYHCGVTNTPLWRNGPPEKPVLCNACGSRWRTKGT 41 ****************88888***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.0E-10 | 1 | 55 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.14E-11 | 5 | 46 | No hit | No description |
CDD | cd00202 | 2.80E-16 | 6 | 51 | No hit | No description |
Pfam | PF00320 | 5.0E-14 | 7 | 41 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 7 | 32 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.095 | 7 | 40 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.9E-12 | 7 | 41 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF13919 | 4.2E-10 | 273 | 374 | IPR028020 | ASX homology domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 520 aa Download sequence Send to blast |
MGKQGPCYHC GVTNTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYTPLHA RADGDENDDH 60 HRFQRMKSIS FSNKNKETKM LKRKALDENI IIKRPLLEFN YGLKKAVLEE DASNRSSSGS 120 AVSNSESCAQ FSSADGSELT GPSQSNAWDT TVPCKRRTCV GRPKSSSVEK LTKDLYNILQ 180 EQQSSCLSVS SEEDLLFENE MSMVSVEIGH GSVLMKNPHS FAREEESEAS SLSSIENKSS 240 ISEAYSHSVK RVEIGAERGS YYGGQAIKQE QFKRTKSQTE RVHVLGSHSS PLCSIDLKDV 300 FNCDEFIKQF TEEEQKKLMK LLPQIDSDNL PDSLRMMFES AQFKDNFSLL QQLIADGVFD 360 MSSSSGAKLE DSRAFKKLAL TDLNKSRLVE SYYLLKEREK ETGDSVTTTV QKSSNLNVPK 420 NIVTIKRRCE DQTQLKSESR GLMRSPKRVM KMKATHERKV LTENNVPCFS PRSLASVFAQ 480 EGGSAVFGYE GNCSSDQDLL LLDLPSNGSF PQAELLHQL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10007115m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY062562 | 0.0 | AY062562.1 Arabidopsis thaliana Unknown protein (Z97343.42) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006285659.1 | 0.0 | GATA transcription factor 26 isoform X1 | ||||
Swissprot | Q8W4H1 | 0.0 | GAT26_ARATH; GATA transcription factor 26 | ||||
TrEMBL | R0F9D0 | 0.0 | R0F9D0_9BRAS; Uncharacterized protein | ||||
STRING | XP_006285659.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1606 | 27 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17570.3 | 0.0 | GATA transcription factor 26 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10007115m |
Entrez Gene | 17879827 |