PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10006995m | ||||||||
Common Name | CARUB_v10006995mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | TCP | ||||||||
Protein Properties | Length: 216aa MW: 23807.7 Da PI: 5.7017 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 81.4 | 2.4e-25 | 56 | 118 | 17 | 78 |
TCP 17 gRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaess 78 gR RRvRl+++caar+++L++eLG+++d++t+eWLlqqa+p i+ +tg++ + ++ ++es Carubv10006995m 56 GRIRRVRLPVLCAARIYQLTKELGHKTDGETLEWLLQQAEPWIISATGNGIRPVGATtTTESV 118 799**********************************************55555333222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 16.471 | 46 | 101 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 2.4E-20 | 57 | 119 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MDSKTNPNLP SFLNLSPHNQ DTDKKRKQTE VKGFDFVVGD KELKRKKEEE QIQLLGRIRR 60 VRLPVLCAAR IYQLTKELGH KTDGETLEWL LQQAEPWIIS ATGNGIRPVG ATTTTESVVV 120 SRPLITADLM GCYHNTEGEA SRSQMAANGL WRNETGQNTT GGFDLNYGFG FDFNGVSEMG 180 FGNNQMPELE LGLSQDGNVG VLNPQVHQQM GQGQS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 24 | 46 | KRKQTEVKGFDFVVGDKELKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10006995m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023634344.1 | 1e-146 | LOW QUALITY PROTEIN: transcription factor TCP6 | ||||
Swissprot | Q9FLM6 | 1e-90 | TCP6_ARATH; Transcription factor TCP6 | ||||
TrEMBL | R0H4K5 | 1e-159 | R0H4K5_9BRAS; Uncharacterized protein | ||||
STRING | XP_006285545.1 | 1e-159 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15743 | 14 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41030.1 | 5e-93 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10006995m |
Entrez Gene | 17878045 |
Publications ? help Back to Top | |||
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