PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10006906m | ||||||||
Common Name | CARUB_v10006906mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | NAC | ||||||||
Protein Properties | Length: 343aa MW: 39056.6 Da PI: 8.0812 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.3 | 5e-52 | 22 | 148 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 pGfrFhPtdeelv++yLk+kv +k+l++ e ik+vdiyk++PwdLpk ++ +ekewyf+++rd+ky++++r+nr+t g+Wkatg+d++++s Carubv10006906m 22 LPGFRFHPTDEELVSFYLKRKVLHKSLPF-ELIKKVDIYKYDPWDLPKLAAMGEKEWYFYCPRDRKYRNSTRPNRVTGGGFWKATGTDRPIYSL 114 69**************************9.89***************8778899**************************************98 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +glkk+Lvfy+gra kg+ktdW+mhe+rl Carubv10006906m 115 dSTRCIGLKKSLVFYRGRAAKGVKTDWMMHEFRL 148 56677***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.49E-58 | 19 | 193 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.02 | 21 | 193 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-25 | 23 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MVLVMDDEES NNNVERYDDV VLPGFRFHPT DEELVSFYLK RKVLHKSLPF ELIKKVDIYK 60 YDPWDLPKLA AMGEKEWYFY CPRDRKYRNS TRPNRVTGGG FWKATGTDRP IYSLDSTRCI 120 GLKKSLVFYR GRAAKGVKTD WMMHEFRLPS VSDSHHSTYP NYNNKKQHLN NNNNSTKEIP 180 SNDAWAICRI FKKTNAVSSQ RSIPQSWVYP TIPDTNQYNS HNTATLLASS DVLNHIATRQ 240 NLIPSPVNEH TSFTESAAAY FASQMLGVPY NNTSRNIGTG DALFLRNSVT GDALFLSNNE 300 NNYFNSLTGA LTHELPNVRS MVMEEEETTV SEISATSYST NN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-52 | 23 | 148 | 17 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00537 | DAP | Transfer from AT5G39820 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10006906m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB016876 | 1e-139 | AB016876.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKM21. | |||
GenBank | CP002688 | 1e-139 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006285478.1 | 0.0 | putative NAC domain-containing protein 94 | ||||
Swissprot | Q9FIW5 | 0.0 | NAC94_ARATH; Putative NAC domain-containing protein 94 | ||||
TrEMBL | R0F9M7 | 0.0 | R0F9M7_9BRAS; Uncharacterized protein | ||||
STRING | XP_006285478.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM306 | 28 | 200 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39820.1 | 0.0 | NAC domain containing protein 94 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10006906m |
Entrez Gene | 17879013 |