PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Carubv10006864m | ||||||||
Common Name | CARUB_v10006864mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 346aa MW: 38062.6 Da PI: 6.0417 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.4 | 4.4e-15 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEd++l ++++ G g+W++ ++ g++R++k+c++rw +yl Carubv10006864m 15 KGPWMQEEDDKLTAYINENGYGNWRSLPKLAGLNRCGKSCRLRWMNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.2 | 1.6e-17 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE+ +++++++lG++ W++Ia +++ gRt++++k++w++++ Carubv10006864m 68 RGKFSDEEESTIIRLHALLGNK-WSKIAGHLP-GRTDNEIKNYWNTHM 113 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.076 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.74E-29 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.8E-11 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-13 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-22 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.59E-9 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 27.333 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 4.6E-16 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.3E-16 | 68 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.61E-12 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-27 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 346 aa Download sequence Send to blast |
MGRSPCCDQD KGVKKGPWMQ EEDDKLTAYI NENGYGNWRS LPKLAGLNRC GKSCRLRWMN 60 YLRPDIRRGK FSDEEESTII RLHALLGNKW SKIAGHLPGR TDNEIKNYWN THMRKKLLQM 120 GIDPMTHEPR TNELSPILDV SQMLVAAINN GQFGNNNLFN NSTTALEDLL KLQLIHKMLQ 180 IISPKAVPNI NSFNTATSVN PKPDTTVPHV FINQSGITPE AATSDLISSY DNVWDGIEDN 240 QLPGLVTVSQ DGLNASKPGT STTTEGNDQT GAGYYPDQLH KIPSSGLVSV SPVTSGLNHP 300 GTAQHSSAGS DVLEDWGKFL DDETSDSCWK SFLDLTSPTS SPLPW* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 4e-26 | 15 | 117 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 4e-26 | 15 | 117 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 4e-26 | 15 | 117 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00438 | DAP | Transfer from AT4G17785 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Carubv10006864m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF175989 | 0.0 | AF175989.1 Arabidopsis thaliana putative transcription factor (MYB39) mRNA, complete cds. | |||
GenBank | AK118728 | 0.0 | AK118728.1 Arabidopsis thaliana At4g17780 mRNA for putative MYB transcription factor, complete cds, clone: RAFL21-07-A19. | |||
GenBank | AY550297 | 0.0 | AY550297.1 Arabidopsis thaliana MYB transcription factor (At4g17785) mRNA, complete cds. | |||
GenBank | BT005642 | 0.0 | BT005642.1 Arabidopsis thaliana clone U51012 putative MYB transcription factor (At4g17785) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006285445.1 | 0.0 | transcription factor MYB39 | ||||
Swissprot | Q8GWP0 | 0.0 | MYB39_ARATH; Transcription factor MYB39 | ||||
TrEMBL | R0H484 | 0.0 | R0H484_9BRAS; Uncharacterized protein | ||||
STRING | XP_006285445.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12243 | 17 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G17785.1 | 0.0 | myb domain protein 39 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Carubv10006864m |
Entrez Gene | 17879890 |