PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10006793m | ||||||||
Common Name | CARUB_v10006793mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 227aa MW: 26406.6 Da PI: 5.5111 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 40.7 | 3.1e-13 | 9 | 50 | 3 | 44 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 +en+ r + f +R +g+lKK +EL +LCd+ +++iifs+++ Carubv10006793m 9 VENNKARAIFFRRRSEGVLKKVKELTILCDILACLIIFSPND 50 699999*********************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PRINTS | PR00404 | 6.5E-6 | 1 | 21 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 15.11 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.5E-14 | 1 | 58 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.71E-18 | 3 | 92 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 3.27E-24 | 3 | 82 | No hit | No description |
Pfam | PF00319 | 1.5E-12 | 9 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.5E-6 | 21 | 36 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.5E-6 | 36 | 57 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MVKVKLAWVE NNKARAIFFR RRSEGVLKKV KELTILCDIL ACLIIFSPND AEPMVWPSVE 60 TARGLLDNFF SLPKFEQKKR DACLESFLKE KINKVQEKLK KNQEKCKEYV IDQLMIQLQQ 120 GCRIDDFNLN EINELLSFSR DRIILGREML GSMQFSPLRD PPVLPFEVQV EQLAEKRDEA 180 TVLIELANND VRQEPPPNET FAREDHVDLS LLGIDKDWLK LNNYHF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10006793m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC254573 | 0.0 | AC254573.1 Capsella rubella clone JGIBPHG-17A14, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006296244.1 | 6e-79 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | R0GX57 | 1e-163 | R0GX57_9BRAS; Uncharacterized protein | ||||
STRING | XP_006282850.1 | 1e-164 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4724 | 14 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40210.1 | 5e-63 | AGAMOUS-like 48 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10006793m |
Entrez Gene | 17880142 |