PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10006727m | ||||||||
Common Name | CARUB_v10006727mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB | ||||||||
Protein Properties | Length: 245aa MW: 27560.7 Da PI: 9.9144 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.7 | 4.9e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT +Ed +l+ +vk++G+g+W + a++ g++R++ +c++rw +yl Carubv10006727m 14 KGEWTDDEDRKLAAYVKEHGSGHWGSLAKKAGLKRCGRSCRLRWMNYL 61 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.4 | 9.1e-15 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++++ E++++ + +++ G++ W+ Ia++++ +Rt+ ++k++w++ Carubv10006727m 67 RGKFSPHEEQQIFKFHALIGNR-WAVIAKHIP-NRTDHDIKNYWNS 110 89********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.584 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.67E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.0E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-22 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.67E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 22.263 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.8E-14 | 67 | 110 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-24 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.61E-9 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MGRMTWFDDE GMKKGEWTDD EDRKLAAYVK EHGSGHWGSL AKKAGLKRCG RSCRLRWMNY 60 LSPDIKRGKF SPHEEQQIFK FHALIGNRWA VIAKHIPNRT DHDIKNYWNS RLKKRLAKER 120 IKPATTHEPA AIITVEATST STTSPSPTLS TTSSSFCPTG SARLLNKLAT GIASRKYRLD 180 KIKMVILQPR KASGKEKMLI TMEEEDLIAC FMDIDERLMS TTPFCEGSTA TTTSLVAFDD 240 CSIV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-26 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Functions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10006727m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006285337.1 | 0.0 | transcription factor WER | ||||
Swissprot | Q9LE63 | 2e-53 | MY106_ARATH; Transcription factor MYB106 | ||||
TrEMBL | R0H0U2 | 0.0 | R0H0U2_9BRAS; Uncharacterized protein | ||||
STRING | XP_006285337.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74430.1 | 1e-90 | myb domain protein 95 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10006727m |
Entrez Gene | 17879204 |