PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10006684m | ||||||||
Common Name | CARUB_v10006684mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB | ||||||||
Protein Properties | Length: 264aa MW: 29990.8 Da PI: 8.3826 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.4 | 5.1e-16 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT Ed++l d+++ +G g W+ ++ g++R++k+c++rw +yl Carubv10006684m 17 RGAWTDHEDKILRDYITTHGEGKWSILPNQAGLKRCGKSCRLRWKNYL 64 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.4 | 1.2e-16 | 70 | 114 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + +E+el+++++++lG++ W++Ia +++ gRt++++k++w++ Carubv10006684m 70 RGNISSDEEELIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNHWNSN 114 78999*****************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.269 | 12 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.21E-27 | 15 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.3E-12 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.1E-13 | 17 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-22 | 18 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.14E-8 | 19 | 64 | No hit | No description |
PROSITE profile | PS51294 | 24.564 | 65 | 119 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-15 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-14 | 70 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-23 | 72 | 119 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.36E-11 | 74 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006633 | Biological Process | fatty acid biosynthetic process | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0010023 | Biological Process | proanthocyanidin biosynthetic process | ||||
GO:0090379 | Biological Process | secondary cell wall biogenesis involved in seed trichome differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MGKRGTSTTV KREELNRGAW TDHEDKILRD YITTHGEGKW SILPNQAGLK RCGKSCRLRW 60 KNYLRPGIKR GNISSDEEEL IIRLHNLLGN RWSLIAGRLP GRTDNEIKNH WNSNLRKRLP 120 KTQTNQPKRT KNSIKNENNV CVIRTKAIRC SKSLLFSDLS LQKQTSIISP VLLKDQDMEQ 180 GGSSSLMGDL EFDFDKIQSE FLFPDLMDFD GLDCGNVTSL VSSNEILGDL VPHGQGNLDL 240 NRPFTSYHHQ HGDDEDWLGD FNC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-26 | 14 | 119 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10006684m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF371981 | 0.0 | AF371981.2 Arabidopsis thaliana putative transcription factor MYB123 (MYB123) mRNA, complete cds. | |||
GenBank | AY519630 | 0.0 | AY519630.1 Arabidopsis thaliana MYB transcription factor (At5g35550) mRNA, complete cds. | |||
GenBank | DQ447000 | 0.0 | DQ447000.1 Arabidopsis thaliana clone pENTR221-At5g35550 myb family transcription factor (At5g35550) mRNA, complete cds. | |||
GenBank | DQ653318 | 0.0 | DQ653318.1 Arabidopsis thaliana clone 0000017211_0000012024 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006282833.1 | 0.0 | transcription factor TT2 isoform X1 | ||||
Swissprot | Q9FJA2 | 1e-164 | TT2_ARATH; Transcription factor TT2 | ||||
TrEMBL | R0F2Z7 | 0.0 | R0F2Z7_9BRAS; Uncharacterized protein | ||||
STRING | XP_006282833.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 1e-166 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10006684m |
Entrez Gene | 17877391 |