PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10006597m | ||||||||
Common Name | CARUB_v10006597mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB | ||||||||
Protein Properties | Length: 241aa MW: 27924.4 Da PI: 7.3457 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.5 | 4.6e-16 | 15 | 59 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++rWT E+++l+d+v ++G + Wk Ia++m+ +Rt ++c+ rw++ Carubv10006597m 15 KDRWTDSEELKLKDLVGLYGLDKWKIIAEKMQ-TRTSNSCRMRWYN 59 68******************************.************9 PP | |||||||
2 | Myb_DNA-binding | 44.1 | 4.6e-14 | 70 | 111 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +T++Ede ++ a +++G++ W++Ia+ + gRt +++k+rw+ + Carubv10006597m 70 FTEDEDEVILVAQRLFGNK-WSKIAKLLE-GRTNNDVKNRWRVL 111 8******************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.69 | 10 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.39E-26 | 14 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.8E-15 | 14 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-14 | 15 | 59 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.60E-13 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-20 | 17 | 68 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1E-11 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 14.079 | 66 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.6E-18 | 69 | 112 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.05E-9 | 70 | 111 | No hit | No description |
Pfam | PF00249 | 7.9E-12 | 70 | 111 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MHQESTVQKK VIRRKDRWTD SEELKLKDLV GLYGLDKWKI IAEKMQTRTS NSCRMRWYNE 60 LNPKTNQADF TEDEDEVILV AQRLFGNKWS KIAKLLEGRT NNDVKNRWRV LQSRCPRETT 120 SAQTSCWVHS EFLMFFYEAM DEFHNYRSNM LNEETTNLHA QYLQEENNSS RMPEQHSGHH 180 HHFSTIFPAD PLALFTPHVS IPQPPPPPPS APFSLPSPGA ADAMTRKTPK FFDFLGVGDS 240 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-25 | 18 | 108 | 10 | 100 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10006597m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023634873.1 | 1e-137 | transcription factor MYB117 | ||||
TrEMBL | R0GML0 | 0.0 | R0GML0_9BRAS; Uncharacterized protein | ||||
STRING | XP_006285236.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM33541 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G29020.2 | 1e-50 | myb domain protein 110 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10006597m |
Entrez Gene | 17880471 |