PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10006458m
Common NameCARUB_v10006458mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Dof
Protein Properties Length: 248aa    MW: 27601.4 Da    PI: 8.5671
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10006458mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof111.24.9e-352176560
           zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
                      + cprCds+ntkfCyynnys sqPryfCk+CrryWt+GGalr++P+Gg +r  k+
  Carubv10006458m 21 PRVCPRCDSDNTKFCYYNNYSQSQPRYFCKKCRRYWTHGGALRDIPIGGRCRTPKR 76
                     678*************************************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-251676IPR003851Zinc finger, Dof-type
PfamPF027018.2E-312276IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.42276IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102460IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010154Biological Processfruit development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000032Biological Processregulation of secondary shoot formation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MANLNVSAKE NNQVNEEKPP PRVCPRCDSD NTKFCYYNNY SQSQPRYFCK KCRRYWTHGG  60
ALRDIPIGGR CRTPKRPRIE QSSVSLMVSI ENHQPGNNHQ PLRHVQENSR FLGSFGGSST  120
SSVATSIVGN QFGYMTEVHS VSVTNVPPGR SFRPILLERL DFGEEPYQQG FYDVGTNDLI  180
GNPFINQSIG EYVDNLNSYG INQSSFNNTM NGSHEASSSG SRGSSGTEMN NDDNKKKIGS  240
NFFFRSA*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10006458m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282805.10.0dof zinc finger protein DOF4.4 isoform X1
SwissprotQ9SUA94e-88DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBLR0GX210.0R0GX21_9BRAS; Uncharacterized protein
STRINGXP_006282805.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16021789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21050.14e-82Dof-type zinc finger domain-containing protein