PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10006457m
Common NameCARUB_v10006457mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 306aa    MW: 34986 Da    PI: 5.1713
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10006457mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.21e-18109159255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+++AeIrd + ng   r++lg+f taeeAa a+++a+ +++g
  Carubv10006457m 109 KYRGVRRRP-WGKFAAEIRDSTRNG--VRVWLGTFQTAEEAAMAYDKAAVRIRG 159
                      8********.**********44465..************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.3E-29108168IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-20109169IPR016177DNA-binding domain
SMARTSM003801.2E-35109174IPR001471AP2/ERF domain
PROSITE profilePS5103222.721109168IPR001471AP2/ERF domain
CDDcd000185.95E-29109168No hitNo description
PfamPF008474.9E-12109159IPR001471AP2/ERF domain
PRINTSPR003677.0E-11110121IPR001471AP2/ERF domain
PRINTSPR003677.0E-11133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MALGNVQEPD GEILKNVWEN FIRKPQTDKT SVHVPDISRT WEELPTLDNI NIPEDSKELL  60
PSLDMSMEAE EWTEFLNAVA SSPNKTSHDP ITNPTIESFS SRVSCNTRKY RGVRRRPWGK  120
FAAEIRDSTR NGVRVWLGTF QTAEEAAMAY DKAAVRIRGT QKAHTNFQLD TVIKAMEMDC  180
SPNYYPIHSS NTYHTIRSNH GIGSRTEKEA IKAYDKDVDG MVDNHCTLSY RSTHEEYTET  240
CGLRESGGET WLGSRKRRRS DKDFMFQEVK MKKMVTEEET LCDVFGLFEF EDFGSDYLDT  300
LLSSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-24108169161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-24108169464ATERF1
3gcc_A5e-24108169464ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1254258RKRRR
2254259RKRRRS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10006457m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282804.20.0ethylene-responsive transcription factor ERF091
SwissprotO495151e-164ERF91_ARATH; Ethylene-responsive transcription factor ERF091
TrEMBLR0F2340.0R0F234_9BRAS; Uncharacterized protein
STRINGXP_006282804.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.11e-147ERF family protein