PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10006450m
Common NameCARUB_v10006450mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 248aa    MW: 25926.7 Da    PI: 4.4063
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10006450mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.7e-05146167223
                      EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      kC++C k+Fs++     H+r H
  Carubv10006450m 146 KCNICQKPFSSWKAVFGHLRQH 167
                      7*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280147167IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MSNADERKLT TEEEINESSD DDSGYLCTDE KGDFRQIVLG LPALSLAESF LADETTRNKA  60
KVAATLIVTA AEEAVGKTDQ PLAGTGSTVG APDNKIKVGR PRVLLEALAA GSGSTTVGST  120
EDEEPIKKAK RKGAALLTNP PIGPPKCNIC QKPFSSWKAV FGHLRQHKNR GYLGFLPPPT  180
FDAAEERSGG TVAASSDGGA SGLGTGGLGI DLNVSPIEED EEAAFTPKFD LNRSPPQDDE  240
EQGDKAE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10006450m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006285117.11e-179uncharacterized protein LOC17878388
TrEMBLR0H0C21e-178R0H0C2_9BRAS; Uncharacterized protein
STRINGXP_006285117.11e-179(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58752241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35700.11e-74C2H2 family protein