PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10006122m
Common NameCARUB_v10006122mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 95aa    MW: 10780.1 Da    PI: 8.5137
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10006122mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.73.7e-0725611954
                     HHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH 19 afeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                        +Lr++lP+   + +s K+s + +L+++++YI++L
  Carubv10006122m 25 LVTKLRQILPEiGQRRRSDKVSASKVLQETCNYIRNL 61
                     5579*******999*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.3E-7479IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.89661IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-72081IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-42461IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MSNRRSSRQS SSTAPRISDD QMIDLVTKLR QILPEIGQRR RSDKVSASKV LQETCNYIRN  60
LNREVDNLSE RLSQLLESVD EDSPEAAVIR SLFM*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. Binds IBH1, forming a pair of antagonistic bHLH transcription factors that function downstream of BZR1 to mediate brassinosteroid regulation of cell elongation. Regulates light responses by binding and inhibiting the activity of the bHLH transcription factor HFR1, a critical regulator of light signaling and shade avoidance. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868, ECO:0000269|PubMed:20009022, ECO:0000269|PubMed:20305124, ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:23221598}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10006122m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and epibrassinolide. {ECO:0000269|PubMed:16527868, ECO:0000269|PubMed:20009022}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0882461e-82AY088246.1 Arabidopsis thaliana clone 4734 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284840.11e-60transcription factor PRE1
SwissprotQ9FLE91e-49PRE1_ARATH; Transcription factor PRE1
TrEMBLR0H2K43e-59R0H2K4_9BRAS; Uncharacterized protein
STRINGCagra.5905s0007.1.p5e-60(Capsella grandiflora)
STRINGXP_006284840.15e-60(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25928225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39860.16e-48bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Mao WT, et al.
    The C-Terminal Sequence and PI motif of the Orchid (Oncidium Gower Ramsey) PISTILLATA (PI) Ortholog Determine its Ability to Bind AP3 Orthologs and Enter the Nucleus to Regulate Downstream Genes Controlling Petal and Stamen Formation.
    Plant Cell Physiol., 2015. 56(11): p. 2079-99
    [PMID:26423960]
  3. Cai H, et al.
    ERECTA signaling controls Arabidopsis inflorescence architecture through chromatin-mediated activation of PRE1 expression.
    New Phytol., 2017. 214(4): p. 1579-1596
    [PMID:28295392]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  5. Peng M, et al.
    Linking PHYTOCHROME-INTERACTING FACTOR to Histone Modification in Plant Shade Avoidance.
    Plant Physiol., 2018. 176(2): p. 1341-1351
    [PMID:29187567]