PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10006084m | ||||||||
Common Name | CARUB_v10006084mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB_related | ||||||||
Protein Properties | Length: 106aa MW: 12240.7 Da PI: 9.6961 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.1 | 2.4e-09 | 35 | 79 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 WT E +l+ +a + + + +W+ +ar +g g+++++++ ++ Carubv10006084m 35 TWTRKENKLFERALAIYDQDtpdRWHNVARAVG-GKSAEEVRRHYE 79 5*****************99*************.**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 11.202 | 31 | 86 | IPR017884 | SANT domain |
SMART | SM00717 | 2.3E-9 | 32 | 84 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.8E-6 | 35 | 88 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.6E-7 | 35 | 79 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.79E-8 | 35 | 82 | No hit | No description |
SuperFamily | SSF46689 | 1.64E-13 | 36 | 89 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 106 aa Download sequence Send to blast |
NQSSIKIQKT FFNLPLSIYI LIRVMASNSM SSNATWTRKE NKLFERALAI YDQDTPDRWH 60 NVARAVGGKS AEEVRRHYEL LIRDVNDIES GRYPHPNYYS NGNNH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 3e-30 | 25 | 104 | 1 | 79 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10006084m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT010770 | 1e-101 | BT010770.1 Arabidopsis thaliana At4g36570 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006282757.2 | 2e-55 | protein RADIALIS-like 3 | ||||
Swissprot | Q6NNN0 | 4e-46 | RADL3_ARATH; Protein RADIALIS-like 3 | ||||
TrEMBL | R0GTL0 | 1e-72 | R0GTL0_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_006282757.1 | 2e-73 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM221 | 28 | 198 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.1 | 1e-36 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10006084m |
Entrez Gene | 17880689 |