PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10005867m
Common NameCARUB_v10005867mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 177aa    MW: 19468.6 Da    PI: 6.6897
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10005867mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.2e-183685255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      ++GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Carubv10005867m 36 SFRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTFSTPEMAARAHDVAALAIKG 85
                     69****998.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.8E-123585IPR001471AP2/ERF domain
CDDcd000181.69E-323595No hitNo description
PROSITE profilePS5103222.4973693IPR001471AP2/ERF domain
SMARTSM003801.3E-393699IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-213694IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.8E-323694IPR001471AP2/ERF domain
PRINTSPR003674.8E-103748IPR001471AP2/ERF domain
PRINTSPR003674.8E-105975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MQDSSSERSL RSPAPERTGK SSKTKNEQKG VSKHPSFRGV RMRQWGKWVS EIREPRKKSR  60
IWLGTFSTPE MAARAHDVAA LAIKGGSAHL NFPELAYHLP RPASADPKDI QEAAAAAAAA  120
DWKAPESPSS TVTSSPVADD AFSDLPDLLL DVNDHNKVDG FWDSFPYEDP FFLENY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-162993672Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00436DAPTransfer from AT4G16750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10005867m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1615441e-179AL161544.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 44.
GenBankAY5608741e-179AY560874.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At4g16750) mRNA, complete cds.
GenBankBT0115761e-179BT011576.1 Arabidopsis thaliana At4g16750 mRNA, complete cds.
GenBankBT0205921e-179BT020592.1 Arabidopsis thaliana At4g16750 gene, complete cds.
GenBankCP0026871e-179CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankZ973411e-179Z97341.2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282732.11e-126ethylene-responsive transcription factor ERF039
SwissprotQ9SUK81e-106ERF39_ARATH; Ethylene-responsive transcription factor ERF039
TrEMBLR0GTI61e-125R0GTI6_9BRAS; Uncharacterized protein
STRINGXP_006282732.11e-126(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24922374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16750.11e-106ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]