PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Carubv10005767m | ||||||||
Common Name | CARUB_v10005767mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 202aa MW: 22406.7 Da PI: 7.8645 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.8 | 1.4e-18 | 32 | 81 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykG+r +k +g+WvAeIr+p +kr r++lg++ t+e Aa+a++ a +l+g Carubv10005767m 32 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPEAAARAYDTAVFYLRG 81 69*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.813 | 32 | 89 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-38 | 32 | 95 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-30 | 33 | 90 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.3E-12 | 33 | 81 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-9 | 33 | 44 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.85E-27 | 33 | 91 | No hit | No description |
SuperFamily | SSF54171 | 1.31E-21 | 33 | 90 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.7E-9 | 55 | 71 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 202 aa Download sequence Send to blast |
METATEVATV VSTPVVTVAA AAATTTRKRE KPYKGIRMRK WGKWVAEIRE PNKRSRIWLG 60 SYSTPEAAAR AYDTAVFYLR GPSARLNFPE LLTGVTVSGG GANGGGDMSA AYIRRKAAEV 120 GAQVDALEAA GGNRHHHHHH HHHHNQHQRG NHDYGDNHSD YRINDDHMEC TSKEEFKRCN 180 NGSWERVDLN KLPDPETSED D* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-15 | 31 | 89 | 4 | 63 | ATERF1 |
3gcc_A | 2e-15 | 31 | 89 | 4 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00020 | PBM | Transfer from AT4G36900 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Carubv10005767m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006282466.1 | 1e-150 | ethylene-responsive transcription factor RAP2-10 | ||||
Swissprot | Q9SW63 | 1e-100 | RA210_ARATH; Ethylene-responsive transcription factor RAP2-10 | ||||
TrEMBL | R0GF35 | 1e-149 | R0GF35_9BRAS; Uncharacterized protein | ||||
STRING | XP_006282466.1 | 1e-149 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G36900.1 | 3e-84 | related to AP2 10 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Carubv10005767m |
Entrez Gene | 17879579 |
Publications ? help Back to Top | |||
---|---|---|---|
|