PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10005663m | ||||||||
Common Name | CARUB_v10005663mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | ERF | ||||||||
Protein Properties | Length: 229aa MW: 26683.2 Da PI: 8.9982 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.5 | 5.8e-12 | 125 | 166 | 3 | 51 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +GV++ k + +W A I++ +++++lg+f + eeAa+++++a+ Carubv10005663m 125 MRGVYY-K-NMKWQAAIKVE-----KRQIHLGTFSSQEEAARLYDRAAF 166 79**96.5.7*********6.....6********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 9.572 | 102 | 179 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-6 | 124 | 167 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.9E-5 | 124 | 183 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-9 | 125 | 169 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.38E-12 | 126 | 177 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.1E-8 | 126 | 170 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
RESETFNMVS LRRRRLLGLC CGPNGYVTPL PFLTAEEMIT GIPNPNASVA YTPGQVEKVD 60 EPKEEENMSV EESGRRTRSN HMHFRSEYSD ISPVDSDSIS PKYQPLKRRK RHRRKHVHNQ 120 EPCLMRGVYY KNMKWQAAIK VEKRQIHLGT FSSQEEAARL YDRAAFMCGR EPNFALSEDV 180 IRELKQQSWE EFLACTRRTI TNKKPKRRLE QEDKENNASM LHCPPQEE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10005663m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY133690 | 1e-160 | AY133690.1 Arabidopsis thaliana clone C103146 unknown protein (At4g13040) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006284477.2 | 1e-166 | ethylene-responsive transcription factor-like protein At4g13040 isoform X2 | ||||
Swissprot | Q56XP9 | 1e-113 | ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040 | ||||
TrEMBL | R0GYI9 | 1e-170 | R0GYI9_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_006284477.1 | 1e-171 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6189 | 26 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13040.3 | 1e-102 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10005663m |
Entrez Gene | 17880608 |