PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10005629m
Common NameCARUB_v10005629mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family DBB
Protein Properties Length: 238aa    MW: 26182 Da    PI: 6.3317
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10005629mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.63.9e-06533634
         zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeH 34
                     C+ ++++e++ fC  ++  lC+ C  + H
  Carubv10005629m  5 CDVCDKEEASVFCCADEAALCNGCDRHVH 33
                     *************************9988 PP
2zf-B_box29.22e-095592338
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                     ++ C+ ++e ++ lfC++++  lC++C   +H+   Ht
  Carubv10005629m 55 APLCDICGERRALLFCQEDRAILCRECDIPIHQAneHT 92
                     789*****************************767876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.584147IPR000315B-box-type zinc finger
SMARTSM003362.3E-7447IPR000315B-box-type zinc finger
CDDcd000211.17E-5533No hitNo description
SMARTSM003366.3E-1653100IPR000315B-box-type zinc finger
PROSITE profilePS5011910.18253100IPR000315B-box-type zinc finger
PfamPF006437.2E-85593IPR000315B-box-type zinc finger
CDDcd000211.43E-956100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0080167Biological Processresponse to karrikin
GO:1900458Biological Processnegative regulation of brassinosteroid mediated signaling pathway
GO:2000306Biological Processpositive regulation of photomorphogenesis
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MKIWCDVCDK EEASVFCCAD EAALCNGCDR HVHFANKLAG KHLRFSLTSP TFKDAPLCDI  60
CGERRALLFC QEDRAILCRE CDIPIHQANE HTKKHNRFLL TGVKISASPS AYPRASNSAA  120
ALARAKTRPK SVSSEVPSSA SSEVFTSSPS ATTSNCYYGT EENYHQPSDS GSGSGCTGTG  180
SISEYLMETL PGWRVEDLLE HPSCVSYQDN NNNESYRVYD GSSQYHHQGF WEQKPFS*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269|PubMed:22535582}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10005629m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2303790.0AK230379.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL24-29-C17.
GenBankBT0288930.0BT028893.1 Arabidopsis thaliana unknown protein (At4g39070) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284449.11e-179B-box zinc finger protein 20
SwissprotQ0IGM71e-144BBX20_ARATH; B-box zinc finger protein 20
TrEMBLR0F6941e-177R0F694_9BRAS; Uncharacterized protein
STRINGXP_006284449.11e-178(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65972743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.11e-118DBB family protein
Publications ? help Back to Top
  1. Wei CQ, et al.
    The Arabidopsis B-box protein BZS1/BBX20 interacts with HY5 and mediates strigolactone regulation of photomorphogenesis.
    J Genet Genomics, 2016. 43(9): p. 555-563
    [PMID:27523280]
  2. Thussagunpanit J, et al.
    Involvement of STH7 in light-adapted development in Arabidopsis thaliana promoted by both strigolactone and karrikin.
    Biosci. Biotechnol. Biochem., 2017. 81(2): p. 292-301
    [PMID:27858514]