PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10005616m
Common NameCARUB_v10005616mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family LBD
Protein Properties Length: 244aa    MW: 26769.5 Da    PI: 8.6707
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10005616mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.82.5e-312103197
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C+vlr++C++ C+l+p++     p++q +++ +v+k+FG++ ++++++a+pe +r+++++sl++eA+ r+ +Pv+Gavg++++++++++q
  Carubv10005616m   2 SCNGCRVLRKGCSETCILRPCLqwiesPESQGHATVFVAKFFGRAGLMSFISAVPELQRPALFQSLLFEACGRTVNPVNGAVGMLWTGNWHVCQ 95 
                      6********************************************************************************************* PP

           DUF260  90 lkaelall 97 
                      +++e++l+
  Carubv10005616m  96 AAVETVLR 103
                      **998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.6651107IPR004883Lateral organ boundaries, LOB
PfamPF031952.7E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCILR PCLQWIESPE SQGHATVFVA KFFGRAGLMS FISAVPELQR  60
PALFQSLLFE ACGRTVNPVN GAVGMLWTGN WHVCQAAVET VLRGGTLRPI SDLLETPSLM  120
ISSDESSAIL HRDVSRNGNN QNHRRFSISR SKTEMKDSSV NRKRFKSDSD LDLQVNHQGL  180
TLTGSAVPVP FVPPPPFCKA VNGDRPGSPS EESVTTSCWE NGMRGDNEYK RNKGDKKLLN  240
LFV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10005616m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738740.0AB473874.1 Arabidopsis thaliana ASL41 mRNA for ASYMMETRIC LEAVES2-like 41 protein, complete cds.
GenBankAY0721440.0AY072144.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds.
GenBankAY1229760.0AY122976.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282697.10.0LOB domain-containing protein 39
SwissprotQ9SZE81e-154LBD39_ARATH; LOB domain-containing protein 39
TrEMBLR0GTF81e-180R0GTF8_9BRAS; Uncharacterized protein
STRINGXP_006282697.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.11e-148LOB domain-containing protein 39